General information for g4534.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fork head domain transcription factor slp2.
Parent gene
- The parent gene g4534 is located on chr_2: 3143162..3144389 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4534 | g4534.t1 | isoform | g4534.t1 | 3143162 | 3144389 |
| chr_2 | g4534 | g4534.t1 | exon | g4534.t1.exon1 | 3143162 | 3143669 |
| chr_2 | g4534 | g4534.t1 | cds | g4534.t1.CDS1 | 3143162 | 3143669 |
| chr_2 | g4534 | g4534.t1 | exon | g4534.t1.exon2 | 3143743 | 3144389 |
| chr_2 | g4534 | g4534.t1 | cds | g4534.t1.CDS2 | 3143743 | 3144389 |
| chr_2 | g4534 | g4534.t1 | TTS | g4534.t1 | 3144694 | 3144694 |
| chr_2 | g4534 | g4534.t1 | TSS | g4534.t1 | NA | NA |
Sequences
>g4534.t1 Gene=g4534 Length=1155
ATGGTTAAAGCTGAATATCCAACATTAAAGTTTAACGTGATGAATTTAAATAGTGAAACA
ATGTTTGCAATTTCTGCTCGTACACCGCTCAAATCGAGTTTTTCAATTAACTCAATTTTA
CCTGAAACAATGATGAAAACTTCACCATCGCAATCACCATCACCTTGTCACACACCAATC
GGGTCAGAACAGGAAGATTTGACTGATACAGAATCCGATTTGGATGTTACTGGAACACCA
CCACCACAAGACAACGATTGTGGTAATAATACAAACGACAGTATTGAAACATGCAGCAAT
AAGGATAAATCACTTGAAGACTGCGAAACTAATAGTAATAATGGCGATAAAAAGGATGGT
GAAAAGAAATCAAATGAAAAGCCAAGTTATTCTTATAATGCACTCATAATGCTTGCTATT
CGACAAAGTCCTGAAAAAAGACTGACACTTAATGGCATTTATGAATATATTATGACTAAT
TTTCCATATTATCGCAATAATAAACAAGGATGGCAAAATTCAATTCGTCATAATCTCAGT
CTTAATAAATGTTTTGTAAAAGTTCCACGTCATTATGATGATCCAGGCAAAGGAAATTAC
TGGATGCTTGATCCATCAGCTGAAGATGTTTTTATTGGTGGTTCAACAGGCAAATTAAGA
AGAAGATCAACAGCCGCATCAAGATCTCGTTTAGCTGCATTTAAGCGATCATTAGTTGGT
CCAATGTTTCCATCACTTGGCTATCCTCCATTCCTTTATCCATCACCTGCCGCAGCACTC
GCACAAATGTACAGATATGGACCATATGCACCTCAAATGGCACCGAAACCTGCCTTACCA
CTTGGCCTTCCACTTACGCCTGGTTTTGGCATGGAACGATTTCTTGGTGCTGCTGCTGCT
TCAAATGCATCAAATCCATCAAGTGAACTTTACCAAAGATTGCAATATCAACATCTCTTA
CAAACACATGCTGCTATGCAACAGCAACAAGCTGCCGCACATCTTCATCATCAACAACAA
CAGCATCAGCAGCATCAACAACAACTTAGTCCAAATCATGAAACCTCATCACCTCATCTT
TCACCTTCAGCACAACTCTCACCAATCACACCGACGGTCTTCAAACCAATCACAGTCGTG
TCGAGCAACAGCTAA
>g4534.t1 Gene=g4534 Length=384
MVKAEYPTLKFNVMNLNSETMFAISARTPLKSSFSINSILPETMMKTSPSQSPSPCHTPI
GSEQEDLTDTESDLDVTGTPPPQDNDCGNNTNDSIETCSNKDKSLEDCETNSNNGDKKDG
EKKSNEKPSYSYNALIMLAIRQSPEKRLTLNGIYEYIMTNFPYYRNNKQGWQNSIRHNLS
LNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGGSTGKLRRRSTAASRSRLAAFKRSLVG
PMFPSLGYPPFLYPSPAAALAQMYRYGPYAPQMAPKPALPLGLPLTPGFGMERFLGAAAA
SNASNPSSELYQRLQYQHLLQTHAAMQQQQAAAHLHHQQQQHQQHQQQLSPNHETSSPHL
SPSAQLSPITPTVFKPITVVSSNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4534.t1 | CDD | cd00059 | FH | 127 | 204 | 7.12135E-53 |
| 7 | g4534.t1 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 112 | 223 | 2.8E-45 |
| 11 | g4534.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 126 | - |
| 13 | g4534.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 65 | - |
| 12 | g4534.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 98 | - |
| 15 | g4534.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 126 | - |
| 14 | g4534.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 368 | - |
| 2 | g4534.t1 | PANTHER | PTHR46617 | FORKHEAD BOX PROTEIN G1 | 28 | 239 | 1.3E-95 |
| 5 | g4534.t1 | PRINTS | PR00053 | Fork head domain signature | 127 | 140 | 3.3E-21 |
| 4 | g4534.t1 | PRINTS | PR00053 | Fork head domain signature | 148 | 165 | 3.3E-21 |
| 3 | g4534.t1 | PRINTS | PR00053 | Fork head domain signature | 171 | 188 | 3.3E-21 |
| 1 | g4534.t1 | Pfam | PF00250 | Forkhead domain | 126 | 211 | 3.1E-39 |
| 10 | g4534.t1 | ProSitePatterns | PS00658 | Fork head domain signature 2. | 171 | 177 | - |
| 16 | g4534.t1 | ProSiteProfiles | PS50039 | Fork head domain profile. | 127 | 221 | 38.7 |
| 9 | g4534.t1 | SMART | SM00339 | forkneu4 | 125 | 215 | 2.7E-62 |
| 6 | g4534.t1 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 126 | 220 | 2.04E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0043565 | sequence-specific DNA binding | MF |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09385 (forkhead box protein G)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed