Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4558 g4558.t2 TSS g4558.t2 3235559 3235559
chr_2 g4558 g4558.t2 isoform g4558.t2 3235587 3236652
chr_2 g4558 g4558.t2 exon g4558.t2.exon1 3235587 3235800
chr_2 g4558 g4558.t2 cds g4558.t2.CDS1 3235587 3235800
chr_2 g4558 g4558.t2 exon g4558.t2.exon2 3235855 3235890
chr_2 g4558 g4558.t2 cds g4558.t2.CDS2 3235855 3235890
chr_2 g4558 g4558.t2 exon g4558.t2.exon3 3235942 3235988
chr_2 g4558 g4558.t2 cds g4558.t2.CDS3 3235942 3235988
chr_2 g4558 g4558.t2 exon g4558.t2.exon4 3236063 3236274
chr_2 g4558 g4558.t2 cds g4558.t2.CDS4 3236063 3236080
chr_2 g4558 g4558.t2 exon g4558.t2.exon5 3236378 3236533
chr_2 g4558 g4558.t2 exon g4558.t2.exon6 3236594 3236652
chr_2 g4558 g4558.t2 TTS g4558.t2 3236809 3236809

Sequences

>g4558.t2 Gene=g4558 Length=724
ATGAGATCGCTTTGGTTGATCTTGATTTTTGTACTTTCTGCGTTGATCTCAAAATGTAAT
AGTAGAGAAGCAAGAGCAATTAGTGGTAGAATTGTTGGAGGTGTTGAAGTCGATATTGAA
AAAATTCCTTATCAAGTTTCTTTACTATATTACGATTCTTTAGCATGTGGTGCAAGCATT
TTAAGTTGCAAATTTGTTTTAACAGCTGCTCATTGTTTTCGTGGAGTACTTATTGTTTCA
TCATATACTGTTCGTGCAGGATCTTCCACTTTTTTTGAGGGTGGTTCTATACATGATAAA
TCTCATCAAATATGATGCTACAAGACAAGCAATTCAATTACCTTTTTTGAATGAAGTAAT
TCCTGAAGGGACAGCTGTTATAACTTCTGGTTGGGGACTAACACAAAATTTTAATGAATC
AAGTTATGTTTTACGAATGGTTGAACTTAAAGTAACAAATCAAGCACAATGTAATATTAT
ATTTTTAGGAGATGGTGGAATTACAACTCGTTCGTTTTTGAAAGAATTTCTGAAGAAAGT
TTAACAAAAGTTTTAAATTATTACTACAGATAGTGGTGGACCGCTTCAACATGCTGTTTC
AAAAAAACTTGTTGGAATAGTCTCATTTGGGCAATCAGGTGGTTGTGCTCAAAAAGGAAT
ACCAGGTGTTTACACAAGAGTTGCAGCAATAAGAACTTGGATACGCGAAATTGTCGAAAT
TTAA

>g4558.t2 Gene=g4558 Length=104
MRSLWLILIFVLSALISKCNSREARAISGRIVGGVEVDIEKIPYQVSLLYYDSLACGASI
LSCKFVLTAAHCFRGVLIVSSYTVRAGSSTFFEGGSIHDKSHQI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g4558.t2 Gene3D G3DSA:2.40.10.10 - 31 42 7.6E-17
7 g4558.t2 Gene3D G3DSA:2.40.10.10 - 43 96 7.6E-17
2 g4558.t2 PANTHER PTHR24276 POLYSERASE-RELATED 20 99 1.6E-19
3 g4558.t2 PANTHER PTHR24276:SF83 GH13245P2-RELATED 20 99 1.6E-19
1 g4558.t2 Pfam PF00089 Trypsin 31 90 5.4E-12
10 g4558.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
11 g4558.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
12 g4558.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 16 -
13 g4558.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
9 g4558.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 104 -
5 g4558.t2 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 67 72 -
4 g4558.t2 SUPERFAMILY SSF50494 Trypsin-like serine proteases 8 94 1.33E-21
6 g4558.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed