Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin 5G1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4559 g4559.t2 TSS g4559.t2 3236817 3236817
chr_2 g4559 g4559.t2 isoform g4559.t2 3236844 3237898
chr_2 g4559 g4559.t2 exon g4559.t2.exon1 3236844 3237073
chr_2 g4559 g4559.t2 exon g4559.t2.exon2 3237202 3237539
chr_2 g4559 g4559.t2 cds g4559.t2.CDS1 3237219 3237539
chr_2 g4559 g4559.t2 exon g4559.t2.exon3 3237596 3237635
chr_2 g4559 g4559.t2 cds g4559.t2.CDS2 3237596 3237635
chr_2 g4559 g4559.t2 exon g4559.t2.exon4 3237687 3237782
chr_2 g4559 g4559.t2 cds g4559.t2.CDS3 3237687 3237782
chr_2 g4559 g4559.t2 exon g4559.t2.exon5 3237840 3237898
chr_2 g4559 g4559.t2 cds g4559.t2.CDS4 3237840 3237898
chr_2 g4559 g4559.t2 TTS g4559.t2 3238027 3238027

Sequences

>g4559.t2 Gene=g4559 Length=763
ATGAAATTTTTCAAGCTTTTAATTTTAATTTTATCAGTTTTTAAATTTAGTAAAGCTAGA
GAAAGATCGACTGATGGTAGAATTGTAGGTGGAAAAGAAATTGATATTGAAACAGCTCCT
TTTCAAGTCGGATTATTATTATATGGAGGACATATATGTGGTGGAAGTATTTTGTCGTGT
AAATATGTTTTGACTGCTTCACATTGTGAGTTCTCGTAATTTATAAAATGTTCGTGCAGG
TTCTTCAATGAGAGAATCAGGTGGTTCAATACATGATGTCAGTAGAATTGACATTCATCC
ACTTTGGAATCCAAATTTATATGATTATGATGCTGCTATTTTGACATTAAGAAATCTTAT
TAGATATGATGCATCACGACAAGCAATTCAATTACCTTTTTTGAATGAAGTAATTTTTGT
TGGTACTGATGTTGCTACATCTGGCTGGGGACTGACACAGAATGATAATGAATCCAGAGA
TAATTTGCGAATGGTTGAATTGAAAGTTGTAAATCAAATTTTATGCAATAATGCTCATTT
AAAAGATGGTGGTGTAACATTGAGAATGGTTTGTGCTGCTGCTGATAATAAAGATAGCTG
CAATGGAGATAGCGGCGGACCTCTATGGAACATAAGAACAAGAAGACTTATCGGAATCGT
TTCATTTGGTCAAGATACTGGATGCGCTATAAACGGAATCCCAGGTGTTTACACAAGAGT
TGCTGCAATAAGACCTTGGATAAGAACGATTGTGGGTTTTTAA

>g4559.t2 Gene=g4559 Length=171
MRESGGSIHDVSRIDIHPLWNPNLYDYDAAILTLRNLIRYDASRQAIQLPFLNEVIFVGT
DVATSGWGLTQNDNESRDNLRMVELKVVNQILCNNAHLKDGGVTLRMVCAAADNKDSCNG
DSGGPLWNIRTRRLIGIVSFGQDTGCAINGIPGVYTRVAAIRPWIRTIVGF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g4559.t2 CDD cd00190 Tryp_SPc 2 168 0.000
7 g4559.t2 Gene3D G3DSA:2.40.10.10 - 6 165 0.000
6 g4559.t2 Gene3D G3DSA:2.40.10.10 - 47 159 0.000
2 g4559.t2 PANTHER PTHR24276 POLYSERASE-RELATED 3 167 0.000
3 g4559.t2 PANTHER PTHR24276:SF83 GH13245P2-RELATED 3 167 0.000
1 g4559.t2 Pfam PF00089 Trypsin 6 165 0.000
8 g4559.t2 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 170 20.472
5 g4559.t2 SMART SM00020 trypsin_2 2 165 0.000
4 g4559.t2 SUPERFAMILY SSF50494 Trypsin-like serine proteases 3 170 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values