General information for g4559.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4559 is located on chr_2: 3237898..3240235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4559 | g4559.t6 | TSS | g4559.t6 | 3236817 | 3236817 |
| chr_2 | g4559 | g4559.t6 | isoform | g4559.t6 | 3237898 | 3240235 |
| chr_2 | g4559 | g4559.t6 | exon | g4559.t6.exon1 | 3237898 | 3239903 |
| chr_2 | g4559 | g4559.t6 | TTS | g4559.t6 | 3238027 | 3238027 |
| chr_2 | g4559 | g4559.t6 | cds | g4559.t6.CDS1 | 3239121 | 3239621 |
| chr_2 | g4559 | g4559.t6 | exon | g4559.t6.exon2 | 3239960 | 3240235 |
Sequences
>g4559.t6 Gene=g4559 Length=2282
AAAATAACTTTTATTTTATTTCTAAAACTATCGTTAAAAGTTGAATACATGTGTGAAAAT
ATGAATTGGTTCTGTTTGTATTTAAAATTTATTCATGTTGAAAAATAAAATTTATATTAA
TTGCATTGTCAATTTTATTTTGTTTTAATTTTTGCAAATCCTTATATTATCACAGATTAA
CATTAATTACTTATATTGATTTATAAATTTGCAGACTTCATGATATTTTTTTTATTTTTT
CAAATAATTGTTATGACCAAAGCTTGATCACTTAAATATTTTATTTTTTTTTTTTTGAAA
AACTATAAGTCCTAAAGTTATAAAAGTATTATCATTTGATCAGAACATTTACGATAAATT
AATTCATCACATTTGACTAATCTTGTGCTTCACAATAAGTGATTTTTTACCAGAAAAGTA
AAATCTCTAGTCAACTTGATTTAATTGACTTGAATTCAACTTGACTTTTATTAAAAAATC
AAAAATCACTGATTTAAAAATTATAAAACTGTTCTGACACTTCAACTTGTATTTAAATCT
CTGTTTTACATAAACAATATCAAATTTATAGAAAAAAAGTTGTAGATTTTGTTTAAAAAT
CAATTTTTTGAAAATTTTAAATCAATTTGATTTAAATTAAAATTATTTAAGTGTCTAAGC
TTTGGGTATAACCAATTCAATACAGATGGAATTTTTTAAGAATTGTAAATATTTTATTTA
AAACTAAAATTAAAATTTCATTGCATTTTCTTTTTCATAAAAGTCTCAAAAGTTTTGGCA
AATAAATTTCATTACAAAGAATCTAAGTTGATAAGAAAAATTTCAAATTTTTCCCAATAG
ATAATTTTTAAATTATAGCAGCACCAGTCTGTGTATCAAGTAGATAAGTAAATAATTATA
TAAACTAAATTTAAATAATTAATCAACTATGAATAGTACTATTATCATCTTCATCATATA
ACTGATTAATATTAAGCTCTAAATTTTCTTTTGCTCTTTTACTTTTGCTAGTCATACCAT
AATTTGCAAAGCAGTCATTTGGCAGAAAAGAGTGAAGTACAGGTGAGATAAGTTCAGGAT
CAATTTTGTCTAAATCGCGTGGACCAGTGAGATAGCTAACAATTGAGCCAACAGTAAGTA
CAGTAAAGATTCCAATAGGATTAATCCAATGATAGCTTAATCGATACAAAGGAAAAACTC
CTGATTGATCAGGTACTTCTGAAATGATAATTCCTGTTAAATTTCCAACAGGACATTCTT
CAACAGAAACAGGCAATTTTGGCGCAACAACGACTCCACTAGCAGAAGCAATTTGTGAGC
CCAATGAAACCCATCCTGATAACAATGCACCAGCAAATCCTCCGAAAATGGCTCCAATCG
ATGTCGCATATGGGTTAAGCATTCCTAGTGTAAAGATACCAAAAGTTGTACCTGCTGCAA
TCGCTGTAAGTGATGTTGCAACACCTAAAATTCCACCTAATTTCTCAACAATAAATAAAA
ATCCCATTGTTAAAATTCCAAGAACGAGAATTGATGTTTTCACAAAAATGGCTGCAGTTC
GTTCACTTGGTTGTTTCTTAAAACAACCTTTCAAAATATCTTCCAATAATACAGCTGCTG
TTGAATTCAATACGACAGAAAGTGAGCTCAAAGCAGCACCAAAAACACCAGCAATGAAAA
GGCCAGCAACACCTTTCCATTCTCCAACAGTCTCCATTACATAAATCACAAAAAGTTGAT
CATCACGTTGAATCATTTCACTAGTCAAAGGATCACATTTCCAATATTTTGCATAAATCA
ACAGACCAGCATAGCAACAAACTGATACAAATAAAATAATTCCTATTGTAAACATTAGAA
TGGCAGTTCTAGCTTTTTTCATATTTGGTAGACTCATATATCGTTGAACCATTGTTTGAT
TTACAGAATTAAAACTTGTCCAATAAAAAAATCCACCAATTAATACAGCCCAAAATGTTT
GTCGTTCGTAAGGTGATGGATTAAAATTGAAAAATTCAATTCTTCCACCTTGCATGGCTT
TATCAAAAACATTTACAGGTCCTCCAAGATGAATTGTGCCAATGATTGCTACTACAACAA
CTGACACAAACATTATGCAAATTTGCCATGCATCAGTATGAACAACAGCTTTGATTCCCC
CAACAAAGGTATAAAATACACAAATACAGCATACAACTGCTCCAATAAGATGCAAACTTA
CTCCCACTCACTTGATTCATTGCTAAAGCAGGCACATAAATGATGATTGGTAAGAAAAGA
AG
>g4559.t6 Gene=g4559 Length=166
MIIPVKFPTGHSSTETGNFGATTTPLAEAICEPNETHPDNNAPANPPKMAPIDVAYGLSI
PSVKIPKVVPAAIAVSDVATPKIPPNFSTINKNPIVKIPRTRIDVFTKMAAVRSLGCFLK
QPFKISSNNTAAVEFNTTESELKAAPKTPAMKRPATPFHSPTVSIT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4559.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 166 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
