General information for g4583.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4583 is located on chr_2: 3329847..3333453 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4583 | g4583.t7 | isoform | g4583.t7 | 3329847 | 3333453 |
| chr_2 | g4583 | g4583.t7 | exon | g4583.t7.exon1 | 3329847 | 3330200 |
| chr_2 | g4583 | g4583.t7 | cds | g4583.t7.CDS1 | 3329849 | 3330200 |
| chr_2 | g4583 | g4583.t7 | exon | g4583.t7.exon2 | 3333095 | 3333453 |
| chr_2 | g4583 | g4583.t7 | cds | g4583.t7.CDS2 | 3333095 | 3333453 |
| chr_2 | g4583 | g4583.t7 | TTS | g4583.t7 | 3333136 | 3333136 |
| chr_2 | g4583 | g4583.t7 | TSS | g4583.t7 | 3333525 | 3333525 |
Sequences
>g4583.t7 Gene=g4583 Length=713
ATGAAGTCAAAGGAGTTGAAAAAATTTGCAAATTTAAAGTTCAGTTCACATTCGATTGAA
GTCGATCAATTGATATTAAGCGTTCTGGACAGCATTGAATTTTTTAAAACACAAAAGGAC
TCATCACAACTTTCAAATGGCCTCCAGCAATTTAATTTGCATCTCGAGAAATTATCAAAA
ATTGCCAACACTCTTGAAAATGCAGCACGCGAATGTGATTATGACATTAATTCACCGGGT
AATGGATATTGGAGTTATATTCATAGTTTCAATTGTGCCATTAAAATAATGCAAAATACA
TTCAAGCAAATGACCAAAAATCGTGAGAAAATCCTTTTCAACAAAAAATTTTACATCAAA
GAACTTGACCTTTGGAATCAAATTTTCGAGAGTCTTATTGAAATTTGTGAAACACTATTA
CAATTGCGTGAAGGCGGTGATAAGACGGTTTTATTTTCGCAAGACAACAATTGGGTCATT
CTTAATCGTCTTCATTCAACAATTCATCAAAAAGCATTCTATGGCAGTGCACTTGGATTT
CAATGTGCAAAATCTGTGAAGCCACTTGTCAATTTTCTGGCCTCAACTCTCGTCAGTTAC
TCAAAATGGCATTACTCTGATAAACACAAATCAATCAAACTTCTTGATTTTCCTCTTTCA
ACCGGTAAATACTTTCTAAAACCAAAAAGACGAGCTCATAAATTTATTGTAGC
>g4583.t7 Gene=g4583 Length=237
MKSKELKKFANLKFSSHSIEVDQLILSVLDSIEFFKTQKDSSQLSNGLQQFNLHLEKLSK
IANTLENAARECDYDINSPGNGYWSYIHSFNCAIKIMQNTFKQMTKNREKILFNKKFYIK
ELDLWNQIFESLIEICETLLQLREGGDKTVLFSQDNNWVILNRLHSTIHQKAFYGSALGF
QCAKSVKPLVNFLASTLVSYSKWHYSDKHKSIKLLDFPLSTGKYFLKPKRRAHKFIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4583.t7 | Coils | Coil | Coil | 48 | 68 | - |
| 2 | g4583.t7 | PANTHER | PTHR23025 | TRIACYLGLYCEROL LIPASE | 28 | 236 | 1.1E-22 |
| 1 | g4583.t7 | Pfam | PF06350 | Hormone-sensitive lipase (HSL) N-terminus | 27 | 235 | 5.4E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016042 | lipid catabolic process | BP |
| GO:0008203 | cholesterol metabolic process | BP |
| GO:0016298 | lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed