General information for g4584.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4584 is located on chr_2: 3336823..3337644 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4584 | g4584.t2 | isoform | g4584.t2 | 3334474 | 3335918 |
| chr_2 | g4584 | g4584.t2 | exon | g4584.t2.exon1 | 3334474 | 3334860 |
| chr_2 | g4584 | g4584.t2 | cds | g4584.t2.CDS1 | 3334780 | 3334860 |
| chr_2 | g4584 | g4584.t2 | exon | g4584.t2.exon2 | 3334925 | 3335435 |
| chr_2 | g4584 | g4584.t2 | cds | g4584.t2.CDS2 | 3334925 | 3335435 |
| chr_2 | g4584 | g4584.t2 | exon | g4584.t2.exon3 | 3335497 | 3335918 |
| chr_2 | g4584 | g4584.t2 | cds | g4584.t2.CDS3 | 3335497 | 3335900 |
| chr_2 | g4584 | g4584.t2 | TSS | g4584.t2 | NA | NA |
| chr_2 | g4584 | g4584.t2 | TTS | g4584.t2 | NA | NA |
Sequences
>g4584.t2 Gene=g4584 Length=1320
GTTCCATATGGTTTCATAATGAGAATTTTTAAAACTTATGGTACTCCTGTACCTATCAAT
GATGATAAAGATGAAAAAGAAATTGAAAATGTGTCAGACGAGAAAATTACAGATATTCAA
GATGAAAAAGATGGTGCAACTTTATTATCACCTGAAAGCTCAAAATCACTAGAAGCAATT
TGGCAGAAAGTGAAAAGCACAGAAGAACCTGATTGGCATTCAAATTTAAATTCCATTCAA
GAGACATCGTCGGAAGAACCAGTTTCACCGTTGGTCTATCGAAGTGACAGCATAGTTGAG
CCTCAATTTGCTGAAACATCAAACTATGATGATGATGAAGATGCTTTAGAAATGAAAATT
GATTTAAAGAAAGAAATCACAGATGAAAAGGAAGAAAATTTTGTCAATGATTTTGTTAAA
AAATATGAGACAACTAGTAGCAATAGTATCATTGATCCAATTATCACACGACCTCGTATG
AACTCTCGTACATTGAGTGAAGAAAATATTGTCGTTGATGTAGGCATAGATGCATTGAAA
ATAGAAAACCTTCAAAATGCTATGACAAACATAAAAAATGCTGTTTCAGGATCAAGTGAA
ACTGCTATAATAAGCAGTAGCAATATGAGCAATAAAAATGAAACTTTAAAACGTAATTTT
GCATTCAGTGAGCATCGTGATAGAAGTGAAGGAATTCCAAAAGCACCTGAAGATGAATTT
TTATTTACTGTTCCTCGTAATCATTTAATGTCACCTTATATTGCACCAGATGAAATTCTA
AGACAATTTCCTAAAACAAATATTCTCACGAGCATCACTGATCCATGTATCGATGACTGC
GTTGAAATGGCGAAAAAATTACGCGCTCTTAATGTTAATATTGAACTTGATATTGTCGGC
GCATTGCCGCATGGGTTTTTAAACTTTGCCCATATATCTAAAGAATGCCATGATGCATCT
ATGCTATGTCTGAAGCGAATAGCAACATTGCTTGGAATGAAAAATGAAGTTTAAGGTCAA
TGAATGCGCGTGCTAAAATAACAAAGAAAGAGAAAGAATAAACATTTTGCAAATTTACAC
AAACACTTGTTTATGTTATGAAAATGAAATATGCAGTGATCTTGACCTAATTTTAATGCT
TTAGAAAAGACAATTTTTTTACTTGGGATATTAACGGTTTTTATTATTAAAACAGGAAGA
ACAAAAAGGAATATAATTTATTAAATATAAGATAGGCCTAAAGGAGGCGTGTTTCTTACT
TGTCGTCGAAAGGTTGTATAGTTGTCAATGAACAAAAAAGTGCCTGAATAAATCGAAAAA
>g4584.t2 Gene=g4584 Length=331
MRIFKTYGTPVPINDDKDEKEIENVSDEKITDIQDEKDGATLLSPESSKSLEAIWQKVKS
TEEPDWHSNLNSIQETSSEEPVSPLVYRSDSIVEPQFAETSNYDDDEDALEMKIDLKKEI
TDEKEENFVNDFVKKYETTSSNSIIDPIITRPRMNSRTLSEENIVVDVGIDALKIENLQN
AMTNIKNAVSGSSETAIISSSNMSNKNETLKRNFAFSEHRDRSEGIPKAPEDEFLFTVPR
NHLMSPYIAPDEILRQFPKTNILTSITDPCIDDCVEMAKKLRALNVNIELDIVGALPHGF
LNFAHISKECHDASMLCLKRIATLLGMKNEV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4584.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 193 | 327 | 1.8E-13 |
| 5 | g4584.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - |
| 4 | g4584.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 83 | - |
| 2 | g4584.t2 | PANTHER | PTHR23025 | TRIACYLGLYCEROL LIPASE | 199 | 325 | 1.3E-28 |
| 1 | g4584.t2 | Pfam | PF07859 | alpha/beta hydrolase fold | 239 | 301 | 1.4E-5 |
| 3 | g4584.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 238 | 306 | 4.79E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
