Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 6a17.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4589 g4589.t5 TTS g4589.t5 3351404 3351404
chr_2 g4589 g4589.t5 isoform g4589.t5 3351738 3352452
chr_2 g4589 g4589.t5 exon g4589.t5.exon1 3351738 3351978
chr_2 g4589 g4589.t5 cds g4589.t5.CDS1 3351740 3351978
chr_2 g4589 g4589.t5 exon g4589.t5.exon2 3352032 3352452
chr_2 g4589 g4589.t5 cds g4589.t5.CDS2 3352032 3352287
chr_2 g4589 g4589.t5 TSS g4589.t5 3353129 3353129

Sequences

>g4589.t5 Gene=g4589 Length=662
AGTAATATAAATTTTTTCACAAGAACTTTGACATCATCTTATCCAGATTTAGCAAGAAAA
TTACACATTAAAACATCTGATCCAGAAGTTGCTGGCTTTTATAAAGATATTGTTGAGCAA
ACAATCAAATATCGTATAGATAATAATATTCAGAGCAATGACTTTATGTCACTTTTAATG
AAGATGATGAAAGATAACTCTTTGACCTTTAATGAAGTCTGGTCACAATCAGTAGTTTTC
TTTCTAGCTGGTTATGAAACAAGTTCTACAGCTTTAAATTATTGTTTATATGAAATGTCT
CAAAGAAAAGACATTTGTGATAAAGCAAGAGAATCAGTGAAAAAAGCATTAGAAAAACAT
AACGGAGAATTAAATTATGATGCTGTCAATGACATGCAATATATTGAACAATGTGTTAAT
GAGGCTTTAAGAAAACATCCGCCAGCTAATGCTACAAGAAGAATTCCAAGAGAAGATTTT
CAAGTGCCAAATAGTAAAATTGTGATTGAAAAAGGAGTTCATGTAATTATTCCAGTTTGG
GGAATCCATTTCGATCCAGAAATCTATCCAGAACCAGAAACTTATAATCCAGACAGATTT
ACTCCTGAAGAAGTAGCTAAAAGACATAACATGAGCTTTCTACCATTCGGTGAAGGCCCA
AG

>g4589.t5 Gene=g4589 Length=165
MSLLMKMMKDNSLTFNEVWSQSVVFFLAGYETSSTALNYCLYEMSQRKDICDKARESVKK
ALEKHNGELNYDAVNDMQYIEQCVNEALRKHPPANATRRIPREDFQVPNSKIVIEKGVHV
IIPVWGIHFDPEIYPEPETYNPDRFTPEEVAKRHNMSFLPFGEGP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4589.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 165 2.8E-55
2 g4589.t5 PANTHER PTHR24292 CYTOCHROME P450 1 165 4.2E-65
3 g4589.t5 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 1 165 4.2E-65
5 g4589.t5 PRINTS PR00385 P450 superfamily signature 28 45 1.2E-6
7 g4589.t5 PRINTS PR00465 E-class P450 group IV signature 77 93 9.3E-12
6 g4589.t5 PRINTS PR00385 P450 superfamily signature 82 93 1.2E-6
8 g4589.t5 PRINTS PR00465 E-class P450 group IV signature 128 146 9.3E-12
9 g4589.t5 PRINTS PR00465 E-class P450 group IV signature 152 165 9.3E-12
4 g4589.t5 PRINTS PR00385 P450 superfamily signature 159 165 1.2E-6
1 g4589.t5 Pfam PF00067 Cytochrome P450 3 165 8.2E-48
13 g4589.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 36 -
14 g4589.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 17 -
15 g4589.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 18 28 -
16 g4589.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 29 36 -
12 g4589.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 37 165 -
10 g4589.t5 SUPERFAMILY SSF48264 Cytochrome P450 2 165 3.41E-50

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values