Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a20.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4589 g4589.t6 TTS g4589.t6 3351404 3351404
chr_2 g4589 g4589.t6 isoform g4589.t6 3352032 3353091
chr_2 g4589 g4589.t6 exon g4589.t6.exon1 3352032 3353091
chr_2 g4589 g4589.t6 cds g4589.t6.CDS1 3352033 3353091
chr_2 g4589 g4589.t6 TSS g4589.t6 3353129 3353129

Sequences

>g4589.t6 Gene=g4589 Length=1060
ATGGAGCTAACAACGCTTCTTTTTACAATTTTTACCGGAATTTCGTTATTTATTTACTAT
TTTATACATCGTCGTTTAAATTATTGGAAGGTCAGAAATGTACCACACATTGAACCAGAA
TTTTTCCATGGAAACGCTCGTGGTGTCGGCAAAACAATATCTCCTGGTAAATTTTTCAAG
GACATGTACTTTAAACTAAAGAATAAAGGTCCAGTAGTTGGCGTATACATGTATGTAGAA
CCAATGGCAATAATAATGGATTTAGATTTAGTGAAAACAATTCTCGTGAAAGAATTTAAT
ACTTTTCCAAATCGTGGACTTTATCATAATGAAAAAGATGATCCAACAAGTGCAAATTTA
GCATCAATTGAAGATGAACAGTGGAAAATTTTAAGAAATAAAATATCACCAACATTCTCC
AGTGGAAAAATTAAAAACATGTTTCCAATAGTAGGTGAAGTAGCTGATAAAATGATTGAA
CGTATTGAAATTGATAGCAAAGAGAAAGGCTCGATTGAAGTGAAAGATATTTTAGCGAGA
TTTACAACAGATGTGATTGGAAGAGTTGGATTTGGAATAGAGTGCAATAGTTTAGATGAT
AACACAACAAAATTCTATCAAATTGGTTTAAAAGCGTTCAGTAATATAAATTTTTTCACA
AGAACTTTGACATCATCTTATCCAGATTTAGCAAGAAAATTACACATTAAAACATCTGAT
CCAGAAGTTGCTGGCTTTTATAAAGATATTGTTGAGCAAACAATCAAATATCGTATAGAT
AATAATATTCAGAGCAATGACTTTATGTCACTTTTAATGAAGATGATGAAAGATAACTCT
TTGACCTTTAATGAAGTCTGGTCACAATCAGTAGTTTTCTTTCTAGCTGGTTATGAAACA
AGTTCTACAGCTTTAAATTATTGTTTATATGAAATGTCTCAAAGAAAAGACATTTGTGAT
AAAGCAAGAGAATCAGTGAAAAAAGCATTAGAAAAACATAACGGAGAATTAAATTATGAT
GCTGTCAATGACATGCAATATATTGAACAATGTGTTAATG

>g4589.t6 Gene=g4589 Length=353
MELTTLLFTIFTGISLFIYYFIHRRLNYWKVRNVPHIEPEFFHGNARGVGKTISPGKFFK
DMYFKLKNKGPVVGVYMYVEPMAIIMDLDLVKTILVKEFNTFPNRGLYHNEKDDPTSANL
ASIEDEQWKILRNKISPTFSSGKIKNMFPIVGEVADKMIERIEIDSKEKGSIEVKDILAR
FTTDVIGRVGFGIECNSLDDNTTKFYQIGLKAFSNINFFTRTLTSSYPDLARKLHIKTSD
PEVAGFYKDIVEQTIKYRIDNNIQSNDFMSLLMKMMKDNSLTFNEVWSQSVVFFLAGYET
SSTALNYCLYEMSQRKDICDKARESVKKALEKHNGELNYDAVNDMQYIEQCVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g4589.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 17 353 3.9E-75
2 g4589.t6 PANTHER PTHR24292 CYTOCHROME P450 7 353 1.5E-110
3 g4589.t6 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 7 353 1.5E-110
5 g4589.t6 PRINTS PR00464 Group II E-class P450 signature 125 145 2.6E-8
4 g4589.t6 PRINTS PR00464 Group II E-class P450 signature 180 198 2.6E-8
1 g4589.t6 Pfam PF00067 Cytochrome P450 51 353 8.2E-48
10 g4589.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
11 g4589.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 22 -
9 g4589.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 23 353 -
7 g4589.t6 SUPERFAMILY SSF48264 Cytochrome P450 41 353 1.7E-58
6 g4589.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 22 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed