General information for g4605.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4605 is located on chr_2: 3472937..3474222 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4605 | g4605.t2 | TTS | g4605.t2 | 3471705 | 3471705 |
| chr_2 | g4605 | g4605.t2 | isoform | g4605.t2 | 3471709 | 3473629 |
| chr_2 | g4605 | g4605.t2 | exon | g4605.t2.exon1 | 3471709 | 3472476 |
| chr_2 | g4605 | g4605.t2 | cds | g4605.t2.CDS1 | 3472422 | 3472476 |
| chr_2 | g4605 | g4605.t2 | exon | g4605.t2.exon2 | 3472530 | 3472938 |
| chr_2 | g4605 | g4605.t2 | cds | g4605.t2.CDS2 | 3472530 | 3472938 |
| chr_2 | g4605 | g4605.t2 | exon | g4605.t2.exon3 | 3473350 | 3473629 |
| chr_2 | g4605 | g4605.t2 | cds | g4605.t2.CDS3 | 3473350 | 3473629 |
| chr_2 | g4605 | g4605.t2 | TSS | g4605.t2 | 3473651 | 3473651 |
Sequences
>g4605.t2 Gene=g4605 Length=1457
ATGAAGTCATTTTCAATATTACTATTATGTGGTGTTTTGTTTATTGTCATGCTGATCTAC
AACATTCAGTATTTAAAGAATAGCGATTATTCAATTATAGATATTGGAAAATTTGAAGAA
ATAGAAATTGAAGAAGAAAAAGAAGATCTAAGATTTGTTAAAAATATTGAAAGCAGCTCA
ACACTCTTACTTAATGGTGAAAATGTATTTTTTGTTGAAACACAAAATTCAACACAACAT
ATCTTGAATGATCGTCAAGCGTGCAGTATTGAGTCTGCTGCTTTAATGAATCCTAATGCA
TTAATTATTGTGACATTTGTAACACCAAAACATTTTGTCGATTTGAATGAAACACGAGCG
ATTGAAATATTGCGACAATATTCGAACATAATTTTCAGATTTGTAAATTTGAAAAGTTTC
TCAAAGAACACTCCACTAGAGAATTGGATCAAAAGTGGCAAATTGAGCAATTCAAAATTT
GTTGTGTCACATACATCGGATGTGCTACGCTATTTGCTGTTGTATAAATATTCGGGATTA
TATCTTGACACAGATGTCATAGTCACATATCCGTATGGTCGAATAAATATTGAGAATTAT
GCATGTGCAGAGAGTCATAAATTCCTCAATGGTGCCATTTTAAAACTTACCGGTGAAAGT
GGACGACAAATAGCTGAAAGCTTTATGCAAGATCTTATTGCGAATTTTGATGGCAATGTA
TGGGGCAAAAATGGTTTGCAATAAATTATAGACCATTTTTAAAATCTTTAATTTATTCTT
TATAACTACAGGCCCAGAATTATTGACGCGAGTGATTAAGAAAATGTGCAACATCTCATA
CTTTAATTCAACTCAAAAATGCAAAAACTTTACCATTCTTGAGACAGAAAAATGTTACGG
CATTGGTTGGGAAGAATGGGTAAAGTTTTTTGAGCCACACAAACTTGATAGCGTGCGAAG
ACACACAAAAAACTCGTATTATGTGCACTTATGGAATAAATTCAGTAAAACTCGTAAATT
AGAGAAAAACTCAACAGCAGGCTTAAATGAAATTTTAAGAAAATTTTGTCCCAGAGTTTA
CAAGTCTCTCGACAATTTCTTCTAAATAGACATCAGTTTAAACGTAATTTATCGAATCAG
GATAAACTGATATAGCTGCAAGGAGGTAAAGATAAACTTTTTAGTAACTGACTGACATAA
ATTGCAATCTCGTATAATTTCATGAGTCTTAACAAGCGGCATAAAAACGAAAAACTTTTT
ACTCCGCTTCCTTCTCATCGTTGTTTATTTTGTTTTCTATCTATAGAATTTCTTTCATTT
GTACTGTAAATAAAATATAAGAAACTTTATTTCTCTCAGACTGACTGTGATTTAAACAAT
CTAAATGTAATTTTATTATCTATCTACTGTTGTGAATTTTGTGATAAATTTAATAAATTT
TATTAAAATATTTTTTT
>g4605.t2 Gene=g4605 Length=247
MKSFSILLLCGVLFIVMLIYNIQYLKNSDYSIIDIGKFEEIEIEEEKEDLRFVKNIESSS
TLLLNGENVFFVETQNSTQHILNDRQACSIESAALMNPNALIIVTFVTPKHFVDLNETRA
IEILRQYSNIIFRFVNLKSFSKNTPLENWIKSGKLSNSKFVVSHTSDVLRYLLLYKYSGL
YLDTDVIVTYPYGRINIENYACAESHKFLNGAILKLTGESGRQIAESFMQDLIANFDGNV
WGKNGLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4605.t2 | Gene3D | G3DSA:3.90.550.20 | - | 82 | 243 | 2.8E-8 |
| 2 | g4605.t2 | PANTHER | PTHR12042 | LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE | 61 | 245 | 1.6E-42 |
| 1 | g4605.t2 | Pfam | PF04488 | Glycosyltransferase sugar-binding region containing DXD motif | 84 | 198 | 1.6E-15 |
| 7 | g4605.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 8 | g4605.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 9 | g4605.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 16 | - |
| 10 | g4605.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 6 | g4605.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 247 | - |
| 4 | g4605.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 57 | 246 | 5.25E-21 |
| 3 | g4605.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
