Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4g15.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4611 g4611.t2 TSS g4611.t2 3552667 3552667
chr_2 g4611 g4611.t2 isoform g4611.t2 3552770 3557852
chr_2 g4611 g4611.t2 exon g4611.t2.exon1 3552770 3552986
chr_2 g4611 g4611.t2 cds g4611.t2.CDS1 3552770 3552986
chr_2 g4611 g4611.t2 exon g4611.t2.exon2 3553893 3554090
chr_2 g4611 g4611.t2 cds g4611.t2.CDS2 3553893 3554090
chr_2 g4611 g4611.t2 exon g4611.t2.exon3 3554640 3554822
chr_2 g4611 g4611.t2 cds g4611.t2.CDS3 3554640 3554822
chr_2 g4611 g4611.t2 exon g4611.t2.exon4 3557332 3557852
chr_2 g4611 g4611.t2 cds g4611.t2.CDS4 3557332 3557852
chr_2 g4611 g4611.t2 TTS g4611.t2 NA NA

Sequences

>g4611.t2 Gene=g4611 Length=1119
ATGGCTGGTGGAACAGTTTCAGCCGATCAAGTTCAATCGCAAACTCAAGTCAGCTCGACT
ACTATTTTCATTTCTCTTTTACTTCCGGCATTATTGCTTTGGTACGTTTATTGGAAATTA
TCACGTAGACATCTCTATAAACTCGCTGAGAAATTACCGGGACCAAAGGGATTGCCTTTT
ATAGGAAATGCATTAGATCTAACTGGAACATCACATATTGTCTTTAAAACAGTCACAGAA
AAAGGAAAAGAATTTAATCAAGTAATCAAACTATGGGCTGGTCCAAAACTTCTTGTTTTC
TTGGTTGATCCTCGTGATATTGAACTTGTATTGAGCAGTCAAGTTTATCTTGAAAAATCA
CCAGAGTATAGATTTTTTGAACCATGGTTAGGTCAAGGATTGTTAATTAGTTCAGGTCAA
AAATGGCGAGCCCATCGTAAATTAATTGCACCAACTTTTCATCTAAATGTTTTGAAAAGT
TTCATTGAACTCTTTAATGATAACTCGCGACTTGTATGCAAAAAAATGCTAGCATTGAAT
GGTAAAACTTTTGATTGTCATGATTATATGTCAGAATGTACAGTCGAAATTCTTTTGGAA
ACGGCAATGGGTGTCTCGCGCAAGACTCAAGATCAATCTGGTTTCGATTATGCAATGGCT
GTTATGAAAATGTGCGATATTCTGCATCTTCGTCATACAAAGCTTTGGCTTTATCCTGAT
TTTCTTTTTAAACTCTCAAAATACTCGAAACTTCAAGTCAACCTTTTGGATAAAATTCAC
AGTCTTACAAAGAAAGTGATTAAAAGTAAAAAAGAAGCTTTTTCAAAAGGAACACGTGGA
ACTTTGGCAACACCAGAATTCATTAAGCCTGAAGAGAAACAAGAGAAGTCAAAGGAAGAA
AAGAAAGCAGAAACAACAGTTGTAGAAGGACTTTCATTTGGACAATCTGCTGGATTAAAA
GATGATTTAGATGTTGATGATGGTATGGATGTTGGTGAAAAGAAACGATTGGCTTTCTTA
GATTTATTATTGGAAAGTGCTGAAAATGGTGCAGTTATATCTGAACAAGAAATTAAAGAA
CAAGTGGATACAATCATGTTTGAGGGCCATGACACGACG

>g4611.t2 Gene=g4611 Length=373
MAGGTVSADQVQSQTQVSSTTIFISLLLPALLLWYVYWKLSRRHLYKLAEKLPGPKGLPF
IGNALDLTGTSHIVFKTVTEKGKEFNQVIKLWAGPKLLVFLVDPRDIELVLSSQVYLEKS
PEYRFFEPWLGQGLLISSGQKWRAHRKLIAPTFHLNVLKSFIELFNDNSRLVCKKMLALN
GKTFDCHDYMSECTVEILLETAMGVSRKTQDQSGFDYAMAVMKMCDILHLRHTKLWLYPD
FLFKLSKYSKLQVNLLDKIHSLTKKVIKSKKEAFSKGTRGTLATPEFIKPEEKQEKSKEE
KKAETTVVEGLSFGQSAGLKDDLDVDDGMDVGEKKRLAFLDLLLESAENGAVISEQEIKE
QVDTIMFEGHDTT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4611.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 34 314 3.6E-38
8 g4611.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 319 373 1.2E-5
3 g4611.t2 PANTHER PTHR24291:SF106 CYTOCHROME P450 4G1-RELATED 11 373 3.5E-156
4 g4611.t2 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 11 373 3.5E-156
2 g4611.t2 Pfam PF00067 Cytochrome P450 53 306 1.4E-32
1 g4611.t2 Pfam PF00067 Cytochrome P450 332 373 1.4E-5
10 g4611.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
11 g4611.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 38 -
9 g4611.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 39 373 -
6 g4611.t2 SUPERFAMILY SSF48264 Cytochrome P450 53 373 2.1E-45
5 g4611.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 38 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed