Gene loci information

Transcript annotation

  • This transcript has been annotated as Polyphosphoinositide phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4615 g4615.t1 TSS g4615.t1 3598592 3598592
chr_2 g4615 g4615.t1 isoform g4615.t1 3598683 3601356
chr_2 g4615 g4615.t1 exon g4615.t1.exon1 3598683 3598763
chr_2 g4615 g4615.t1 cds g4615.t1.CDS1 3598683 3598763
chr_2 g4615 g4615.t1 exon g4615.t1.exon2 3598828 3598987
chr_2 g4615 g4615.t1 cds g4615.t1.CDS2 3598828 3598987
chr_2 g4615 g4615.t1 exon g4615.t1.exon3 3599041 3599951
chr_2 g4615 g4615.t1 cds g4615.t1.CDS3 3599041 3599951
chr_2 g4615 g4615.t1 exon g4615.t1.exon4 3600007 3601356
chr_2 g4615 g4615.t1 cds g4615.t1.CDS4 3600007 3601356
chr_2 g4615 g4615.t1 TTS g4615.t1 NA NA

Sequences

>g4615.t1 Gene=g4615 Length=2502
ATGGCTACACATTCTAGTAATACAAAATTTCTTCCAGTAATAAGCTCTATTCAAAAGATT
CGAGTTTATGAGACAAAGACTAGTATTCAATTGATAGGAACTAATGACAAAGAAACTCGA
TTTAGAATATTGCAAATAGCACGATCAAATGAATTGCAAATTTATGAAGATCCAAATGAA
TATGATTCCAAAGAAATTCGGAGAATAATCTCTAATTTGAAACATACTAAGAGCTTATCT
GCTTATGGCATTGTTGGATTTGTGAAATTTCTTGAGCATTATTATCTCATACTTGTCACT
AAAAGACATAAAGTGAGCTTCATTGGAAATCACGTAGTTTATACAATCAAAGATACAACA
ATTTACAAAATTACTCCTGATGCTGCCAAAAATTCATCAAATCCACTCGAGTCTAAATAT
CTTAAAATGTTTATGAATGTCGATCTAAGTTCAAATTTCTATTTCTCATATTCTTATGAT
CTAACAAGGACATTACAATATAATTTAGCAGAACCTAAGTTTGTTGGTGAATGTGTCGAT
ATTTCAAAAGAAGAGCCACTTGATTGGAATAATGAAAATTCAAGAGATGAACGTGTGTAT
GCATACAGAAGTACATCTAGAAAAAAGTTTGTATGGAATGAATTTCTATTGAAACCTATG
CAAAAGAAAGTGTTGCATAAAGATTGGCTTCTTGAGTTAGTTCATGGTTATGTAAATCAA
TCTTCAATAAGTATTTATGGCCTTTCTATTTATGTTTGTCTGATTGCAAGACGTTCTAAA
AATTATGCTGGCACAAGATTTCTCAAAAGAGGTGCAAACACATTTGGTGATGTTGCTAAT
GAAGTTGAAACTGAGCAAATTGTGAGTGATGGAAGAAGAATGTCTTCGTTTGTTCAAATG
CGAGGATCAGTTCCAGCGCATTGGTCACAAGATATTAGCAAAATGGTTCCGAAACCTCCG
ATTTCACTTGACATTCCTGATCCTTTTGCAATAACTGCAGGAAAACATTTTGAAAAGCTT
CTATTTCATTATGGTTCTCCAATTATAATTTTGAATTTGGTTAAACGAAAAGAAAAGAGA
AAACATGAGAGCATTTTGACAGATGTGATAGTGAATGATGTAGAATATTTAAATCAATTT
CTACCACCTAATTGTCAAATTCGTTACACTCATTTTGATATGGCAAGAAAAAATCGTACA
GATAAAAATGTAATGGAAGAACTTGATGGCAAAGGAAAGAATTTATTAGCTTTGACTGGA
GTTTTTTATACAGACAGTAATGAAACAACTTATCAAACGGGTGTCATTCGAACTAGTTGT
GTTGACTGTTTAGATCGTACAAATACAGCTCAATTTGCTATGGGACGTGCAGCACTTGCA
TATCAACTTCACAAGTTTGGATTTTTAAAAGCTGATTCTCGTTTACAATTTGATTCAGAA
TGTTGTTCAATGCTTGAATCATTGTATGATATTCAAGGAGATACTCTAGCACTTCAATAT
GGTGGTAGTCAACTTGTTCATCGTATCAAAACTTATCGTAAAACTGCTGCATGGACAAGT
CAAGGGTCTGATATTATGCAAAATCTCTCGAGATACTATTCAAATACTTTCTCAGATCAA
GAGAAACAGCAAAGTATAAATTTATTTCTTGGCTTATATATTCCTTATGAAAATACTAAC
AATGAACACTTATGGGACATGACGACAGATTACAACCTTCACAATTCATTAAGTGTTGAT
AGTGATACTAAAGAGAAAGAGCTTACAATGTGGTACAGTGACATCATTCGAAAAAATTTA
CCATTTTCAACAAGTATTGCAAATAAAATTGTAAAAGAACTTATCAGAATTCATTCACTT
GATCTTGAAATGATTGATTTATACTCAAACTATCATCTTACATATAGACTGACATCATTA
GAAGAAAATGTTGCCTATCAGATTTCACAAATATCTCAGAGAACTATAACACCGACATAC
CGTACTAATTTTTCACCATTCGAGCCTACCAGAAGAGTAACACAATCAGTTAAAACACCA
ACTTCTATAGATATGAATAGTTCATCTGATGATGAAGATACTTCAGAAGAAGACGATGAG
GACACACATTCATCATTGAGATCTTCAATTGCTGAGCAAAGACAAATGGAGAATAAATCG
TATTTCACTGACTCTCTTCCAAGTGATTGCAAAGCAACATATGGCTTTGAATTGAACAGT
CCGGATAAAGATTCAATGACAAAATATAAAAGTTATGTCAATTTTCAGAAGAGATCTCAG
CCATCGGCAGAAAAAAGTGATAAAAAGCAGAAACCAATTATATTAGAAAGTTCAGTGCAA
TATAAAGACTCCTCAGAACAAATAACAGAGCCACAAGTTACTGAAAGTGACAGAAGGAAA
TATGAAAACTACTGCAAACTAATAATTAACCCGGAATATGATGAAAATAGTTCAAGCAGT
GATGTCATTGAAAAATATATTAACTTTAAATTTGAATTATGA

>g4615.t1 Gene=g4615 Length=833
MATHSSNTKFLPVISSIQKIRVYETKTSIQLIGTNDKETRFRILQIARSNELQIYEDPNE
YDSKEIRRIISNLKHTKSLSAYGIVGFVKFLEHYYLILVTKRHKVSFIGNHVVYTIKDTT
IYKITPDAAKNSSNPLESKYLKMFMNVDLSSNFYFSYSYDLTRTLQYNLAEPKFVGECVD
ISKEEPLDWNNENSRDERVYAYRSTSRKKFVWNEFLLKPMQKKVLHKDWLLELVHGYVNQ
SSISIYGLSIYVCLIARRSKNYAGTRFLKRGANTFGDVANEVETEQIVSDGRRMSSFVQM
RGSVPAHWSQDISKMVPKPPISLDIPDPFAITAGKHFEKLLFHYGSPIIILNLVKRKEKR
KHESILTDVIVNDVEYLNQFLPPNCQIRYTHFDMARKNRTDKNVMEELDGKGKNLLALTG
VFYTDSNETTYQTGVIRTSCVDCLDRTNTAQFAMGRAALAYQLHKFGFLKADSRLQFDSE
CCSMLESLYDIQGDTLALQYGGSQLVHRIKTYRKTAAWTSQGSDIMQNLSRYYSNTFSDQ
EKQQSINLFLGLYIPYENTNNEHLWDMTTDYNLHNSLSVDSDTKEKELTMWYSDIIRKNL
PFSTSIANKIVKELIRIHSLDLEMIDLYSNYHLTYRLTSLEENVAYQISQISQRTITPTY
RTNFSPFEPTRRVTQSVKTPTSIDMNSSSDDEDTSEEDDEDTHSSLRSSIAEQRQMENKS
YFTDSLPSDCKATYGFELNSPDKDSMTKYKSYVNFQKRSQPSAEKSDKKQKPIILESSVQ
YKDSSEQITEPQVTESDRRKYENYCKLIINPEYDENSSSSDVIEKYINFKFEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4615.t1 MobiDBLite mobidb-lite consensus disorder prediction 662 707 -
5 g4615.t1 MobiDBLite mobidb-lite consensus disorder prediction 662 688 -
2 g4615.t1 PANTHER PTHR45738:SF5 POLYPHOSPHOINOSITIDE PHOSPHATASE 17 808 6.0E-226
3 g4615.t1 PANTHER PTHR45738 POLYPHOSPHOINOSITIDE PHOSPHATASE 17 808 6.0E-226
1 g4615.t1 Pfam PF02383 SacI homology domain 82 397 9.9E-76
6 g4615.t1 ProSiteProfiles PS50275 Sac phosphatase domain profile. 144 502 67.306

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity MF
GO:0042578 phosphoric ester hydrolase activity MF
GO:0046856 phosphatidylinositol dephosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values