Gene loci information

Transcript annotation

  • This transcript has been annotated as Polyphosphoinositide phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4615 g4615.t2 TSS g4615.t2 3598592 3598592
chr_2 g4615 g4615.t2 isoform g4615.t2 3598683 3599951
chr_2 g4615 g4615.t2 exon g4615.t2.exon1 3598683 3598763
chr_2 g4615 g4615.t2 cds g4615.t2.CDS1 3598683 3598763
chr_2 g4615 g4615.t2 exon g4615.t2.exon2 3598828 3598987
chr_2 g4615 g4615.t2 cds g4615.t2.CDS2 3598828 3598987
chr_2 g4615 g4615.t2 exon g4615.t2.exon3 3599041 3599951
chr_2 g4615 g4615.t2 cds g4615.t2.CDS3 3599041 3599951
chr_2 g4615 g4615.t2 TTS g4615.t2 NA NA

Sequences

>g4615.t2 Gene=g4615 Length=1152
ATGGCTACACATTCTAGTAATACAAAATTTCTTCCAGTAATAAGCTCTATTCAAAAGATT
CGAGTTTATGAGACAAAGACTAGTATTCAATTGATAGGAACTAATGACAAAGAAACTCGA
TTTAGAATATTGCAAATAGCACGATCAAATGAATTGCAAATTTATGAAGATCCAAATGAA
TATGATTCCAAAGAAATTCGGAGAATAATCTCTAATTTGAAACATACTAAGAGCTTATCT
GCTTATGGCATTGTTGGATTTGTGAAATTTCTTGAGCATTATTATCTCATACTTGTCACT
AAAAGACATAAAGTGAGCTTCATTGGAAATCACGTAGTTTATACAATCAAAGATACAACA
ATTTACAAAATTACTCCTGATGCTGCCAAAAATTCATCAAATCCACTCGAGTCTAAATAT
CTTAAAATGTTTATGAATGTCGATCTAAGTTCAAATTTCTATTTCTCATATTCTTATGAT
CTAACAAGGACATTACAATATAATTTAGCAGAACCTAAGTTTGTTGGTGAATGTGTCGAT
ATTTCAAAAGAAGAGCCACTTGATTGGAATAATGAAAATTCAAGAGATGAACGTGTGTAT
GCATACAGAAGTACATCTAGAAAAAAGTTTGTATGGAATGAATTTCTATTGAAACCTATG
CAAAAGAAAGTGTTGCATAAAGATTGGCTTCTTGAGTTAGTTCATGGTTATGTAAATCAA
TCTTCAATAAGTATTTATGGCCTTTCTATTTATGTTTGTCTGATTGCAAGACGTTCTAAA
AATTATGCTGGCACAAGATTTCTCAAAAGAGGTGCAAACACATTTGGTGATGTTGCTAAT
GAAGTTGAAACTGAGCAAATTGTGAGTGATGGAAGAAGAATGTCTTCGTTTGTTCAAATG
CGAGGATCAGTTCCAGCGCATTGGTCACAAGATATTAGCAAAATGGTTCCGAAACCTCCG
ATTTCACTTGACATTCCTGATCCTTTTGCAATAACTGCAGGAAAACATTTTGAAAAGCTT
CTATTTCATTATGGTTCTCCAATTATAATTTTGAATTTGGTTAAACGAAAAGAAAAGAGA
AAACATGAGAGCATTTTGACAGATGTGATAGTGAATGATGTAGAATATTTAAATCAATTT
CTACCACCTAAT

>g4615.t2 Gene=g4615 Length=384
MATHSSNTKFLPVISSIQKIRVYETKTSIQLIGTNDKETRFRILQIARSNELQIYEDPNE
YDSKEIRRIISNLKHTKSLSAYGIVGFVKFLEHYYLILVTKRHKVSFIGNHVVYTIKDTT
IYKITPDAAKNSSNPLESKYLKMFMNVDLSSNFYFSYSYDLTRTLQYNLAEPKFVGECVD
ISKEEPLDWNNENSRDERVYAYRSTSRKKFVWNEFLLKPMQKKVLHKDWLLELVHGYVNQ
SSISIYGLSIYVCLIARRSKNYAGTRFLKRGANTFGDVANEVETEQIVSDGRRMSSFVQM
RGSVPAHWSQDISKMVPKPPISLDIPDPFAITAGKHFEKLLFHYGSPIIILNLVKRKEKR
KHESILTDVIVNDVEYLNQFLPPN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g4615.t2 PANTHER PTHR45738:SF5 POLYPHOSPHOINOSITIDE PHOSPHATASE 17 383 0.000
3 g4615.t2 PANTHER PTHR45738 POLYPHOSPHOINOSITIDE PHOSPHATASE 17 383 0.000
1 g4615.t2 Pfam PF02383 SacI homology domain 82 379 0.000
4 g4615.t2 ProSiteProfiles PS50275 Sac phosphatase domain profile. 144 384 48.825

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity MF
GO:0042578 phosphoric ester hydrolase activity MF
GO:0046856 phosphatidylinositol dephosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed