General information for g4615.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Polyphosphoinositide phosphatase.
Parent gene
- The parent gene g4615 is located on chr_2: 3601356..3603366 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4615 | g4615.t3 | TSS | g4615.t3 | 3598592 | 3598592 |
| chr_2 | g4615 | g4615.t3 | isoform | g4615.t3 | 3598683 | 3599951 |
| chr_2 | g4615 | g4615.t3 | exon | g4615.t3.exon1 | 3598683 | 3598763 |
| chr_2 | g4615 | g4615.t3 | cds | g4615.t3.CDS1 | 3598683 | 3598763 |
| chr_2 | g4615 | g4615.t3 | exon | g4615.t3.exon2 | 3598828 | 3598987 |
| chr_2 | g4615 | g4615.t3 | cds | g4615.t3.CDS2 | 3598828 | 3598987 |
| chr_2 | g4615 | g4615.t3 | exon | g4615.t3.exon3 | 3599041 | 3599325 |
| chr_2 | g4615 | g4615.t3 | cds | g4615.t3.CDS3 | 3599041 | 3599325 |
| chr_2 | g4615 | g4615.t3 | exon | g4615.t3.exon4 | 3599570 | 3599951 |
| chr_2 | g4615 | g4615.t3 | cds | g4615.t3.CDS4 | 3599570 | 3599664 |
| chr_2 | g4615 | g4615.t3 | TTS | g4615.t3 | NA | NA |
Sequences
>g4615.t3 Gene=g4615 Length=908
ATGGCTACACATTCTAGTAATACAAAATTTCTTCCAGTAATAAGCTCTATTCAAAAGATT
CGAGTTTATGAGACAAAGACTAGTATTCAATTGATAGGAACTAATGACAAAGAAACTCGA
TTTAGAATATTGCAAATAGCACGATCAAATGAATTGCAAATTTATGAAGATCCAAATGAA
TATGATTCCAAAGAAATTCGGAGAATAATCTCTAATTTGAAACATACTAAGAGCTTATCT
GCTTATGGCATTGTTGGATTTGTGAAATTTCTTGAGCATTATTATCTCATACTTGTCACT
AAAAGACATAAAGTGAGCTTCATTGGAAATCACGTAGTTTATACAATCAAAGATACAACA
ATTTACAAAATTACTCCTGATGCTGCCAAAAATTCATCAAATCCACTCGAGTCTAAATAT
CTTAAAATGTTTATGAATGTCGATCTAAGTTCAAATTTCTATTTCTCATATTCTTATGAT
CTAACAAGGACATTACAATATAATTTAGCAGAACCTAAGTTTGTTGACGTTCTAAAAATT
ATGCTGGCACAAGATTTCTCAAAAGAGGTGCAAACACATTTGGTGATGTTGCTAATGAAG
TTGAAACTGAGCAAATTGTGAGTGATGGAAGAAGAATGTCTTCGTTTGTTCAAATGCGAG
GATCAGTTCCAGCGCATTGGTCACAAGATATTAGCAAAATGGTTCCGAAACCTCCGATTT
CACTTGACATTCCTGATCCTTTTGCAATAACTGCAGGAAAACATTTTGAAAAGCTTCTAT
TTCATTATGGTTCTCCAATTATAATTTTGAATTTGGTTAAACGAAAAGAAAAGAGAAAAC
ATGAGAGCATTTTGACAGATGTGATAGTGAATGATGTAGAATATTTAAATCAATTTCTAC
CACCTAAT
>g4615.t3 Gene=g4615 Length=206
MATHSSNTKFLPVISSIQKIRVYETKTSIQLIGTNDKETRFRILQIARSNELQIYEDPNE
YDSKEIRRIISNLKHTKSLSAYGIVGFVKFLEHYYLILVTKRHKVSFIGNHVVYTIKDTT
IYKITPDAAKNSSNPLESKYLKMFMNVDLSSNFYFSYSYDLTRTLQYNLAEPKFVDVLKI
MLAQDFSKEVQTHLVMLLMKLKLSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4615.t3 | PANTHER | PTHR45738:SF5 | POLYPHOSPHOINOSITIDE PHOSPHATASE | 17 | 173 | 0 |
| 3 | g4615.t3 | PANTHER | PTHR45738 | POLYPHOSPHOINOSITIDE PHOSPHATASE | 17 | 173 | 0 |
| 1 | g4615.t3 | Pfam | PF02383 | SacI homology domain | 82 | 172 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043813 | phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity | MF |
| GO:0042578 | phosphoric ester hydrolase activity | MF |
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed