General information for g4617.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative DnaJ protein homolog ANJ1.
Parent gene
- The parent gene g4617 is located on chr_2: 3641580..3646925 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4617 | g4617.t4 | isoform | g4617.t4 | 3640432 | 3641966 |
| chr_2 | g4617 | g4617.t4 | exon | g4617.t4.exon1 | 3640432 | 3640929 |
| chr_2 | g4617 | g4617.t4 | TTS | g4617.t4 | 3640449 | 3640449 |
| chr_2 | g4617 | g4617.t4 | exon | g4617.t4.exon2 | 3641007 | 3641966 |
| chr_2 | g4617 | g4617.t4 | cds | g4617.t4.CDS1 | 3641302 | 3641868 |
| chr_2 | g4617 | g4617.t4 | TSS | g4617.t4 | 3642963 | 3642963 |
Sequences
>g4617.t4 Gene=g4617 Length=1458
GTGGCGAGTTTATAGACAAAAAAGATCGTTGTGATGCATGCAAAGGATCAAAAACGGTTG
AAGAGAAAAAAGAGATTACAATTCATATTGATAAGGGCATGAAACATGGACAGAAAATCG
TATTTCGTGGTGAAGGACATCACATGCCAGATTCAGTTCAGGGCGATATTATTGTTGTGC
TCAAAGAGCAAGCACATGAGACATTTAAGCGTGAAGGAAATGACTTAATATTAAATGAGA
CAATTTCCATAACGCAGGCTCTCTGTGGCTTCGACTTAGTGATAAAACATTTAGATGGTC
GAGATCTTCATGTTAAACATGAAGCTGGAAATGTTATGAAAAATGGCGATATTAAGTGCA
TCGTTGGAGAAGGGATGCCAATTTATAAAAATCCTTTTGAGAAAGGAGTTCTGTTCATGA
ATTTCACTGTCGAATTCCCCACGAGCATGGATGTATCAGTTCTTGCTGAGCTCGAAAAGT
GTTTGCCACCGCGACCAGCCTTTGTTATGCCTGACGGTGAACATGTAGAAGAAGTCAGTT
TGTCCGATTATGATCCGCATGCTAGATCAGGAAGAAAGAAGCATTCAGCAGCTTACAATT
CTGATTCTGAAGACGAAGAAAACGGTGGTGCTGGAGGTCCTGGTGTTCAATGTCGTGCAT
CGTAAATTATTTAGTAAAACCTTTTTCAAAACACTAAAAACAGTAAAAGTGTTGTAATCG
CTGGTGAATGGAAATTTTTCGTAAGAAAAAGTATATATTCTGATTTAATTCTCCATATTT
TTTTTTTTATTGCAAATCACCTTCAAGTAACTCATGCTCAAGCACCAAAATGCGTGAATT
TGTAGCGACATTAACATTAATGTCTATTTAGTAAATGCGACTTTTTTGCTTTCATATTTT
TGATAAATCGAACACAAATAGAATGTTTCAATAATCCTCCTCAAATATTCCATAATAATT
CAAAATCTCTTTGCCCAGTTAGTTAAATATCATTAATTTGATATTTAGATAATAAATAAA
ACAAATTAAAAATTTTAAAAAATAATTGAATGAAGAAATCTGACGATAAACATAAAACAT
ATATGATTGTGATTTAGCATTGAATGAATGATCGTGAAGGAAACAAACAACCATGATTAA
ATTATAAATTCAGTATATAACAATTTATTAATTAATGTCTTAGATAACGTACATTAAAAA
ACACAATAATCCTTCATCATCTTTTATGAACAATTCCTTTTTCAATCAGATTGATTTCTC
TTAAAAGAAAGAAGGAGAAATGTACAAGACGAGAAAAAGAAAAAAACAAGAAAAATTGCT
TCAAGCGAACACTAAAAAAGTAAAATAAATAATTAATGAGTATGCAAAAAAAGGCAAGCA
AGAGAAAACTGAACACGTTGAAAGAAGAAAATGAAATCCAATAAAAAGCCAATTCATAAT
CAAAAATGCATTTTTCTT
>g4617.t4 Gene=g4617 Length=188
MKHGQKIVFRGEGHHMPDSVQGDIIVVLKEQAHETFKREGNDLILNETISITQALCGFDL
VIKHLDGRDLHVKHEAGNVMKNGDIKCIVGEGMPIYKNPFEKGVLFMNFTVEFPTSMDVS
VLAELEKCLPPRPAFVMPDGEHVEEVSLSDYDPHARSGRKKHSAAYNSDSEDEENGGAGG
PGVQCRAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g4617.t4 | CDD | cd10747 | DnaJ_C | 1 | 117 | 8.333E-36 |
| 8 | g4617.t4 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 1 | 31 | 1.9E-6 |
| 9 | g4617.t4 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 33 | 115 | 5.4E-25 |
| 6 | g4617.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 188 | - |
| 7 | g4617.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 169 | - |
| 2 | g4617.t4 | PANTHER | PTHR43888 | DNAJ-LIKE-2, ISOFORM A-RELATED | 1 | 186 | 9.4E-51 |
| 3 | g4617.t4 | PANTHER | PTHR43888:SF42 | DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 2 | 1 | 186 | 9.4E-51 |
| 1 | g4617.t4 | Pfam | PF01556 | DnaJ C terminal domain | 1 | 114 | 2.3E-27 |
| 5 | g4617.t4 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 1 | 39 | 4.06E-6 |
| 4 | g4617.t4 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 36 | 117 | 4.84E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
