Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DnaJ protein homolog ANJ1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4617 g4617.t5 TTS g4617.t5 3640449 3640449
chr_2 g4617 g4617.t5 isoform g4617.t5 3640585 3642812
chr_2 g4617 g4617.t5 exon g4617.t5.exon1 3640585 3641837
chr_2 g4617 g4617.t5 cds g4617.t5.CDS1 3641302 3641837
chr_2 g4617 g4617.t5 exon g4617.t5.exon2 3642141 3642441
chr_2 g4617 g4617.t5 cds g4617.t5.CDS2 3642141 3642441
chr_2 g4617 g4617.t5 exon g4617.t5.exon3 3642594 3642675
chr_2 g4617 g4617.t5 cds g4617.t5.CDS3 3642594 3642665
chr_2 g4617 g4617.t5 exon g4617.t5.exon4 3642806 3642812
chr_2 g4617 g4617.t5 TSS g4617.t5 3642963 3642963

Sequences

>g4617.t5 Gene=g4617 Length=1643
ACTAAAGGCAATACGAAATGGATGCGGATAACAAACTATATGAGCTTTTGAATGTATCAA
GGAATGCAACTGATACTGAAATTAAGAAGAGCTATCGAAAGCTGGCAATGAAGTATCATC
CTGATAAAAATCCAAATCCTGAAGAAGCTGAACGATTCAAAGAAATTACATATGCTTACG
AAATCCTCTCAGATCCAGAGAAGAGAAAAACTTACGATCGTTATGGTGTGAAAGGTTTGC
AAGAAGGTGGTGCAGATAGTAGCGATATGTTTAGTCATATTTTTGGTTCATTCTTTGGCG
GAGGAAGTAGTCGGTCATCTGGACCTCAACAATGTGAACCAATTGTAATTCAAGAACTTG
TAACGTTAGAAGATCTTTATGTTGGCGGGCGTGAAGGACATCACATGCCAGATTCAGTTC
AGGGCGATATTATTGTTGTGCTCAAAGAGCAAGCACATGAGACATTTAAGCGTGAAGGAA
ATGACTTAATATTAAATGAGACAATTTCCATAACGCAGGCTCTCTGTGGCTTCGACTTAG
TGATAAAACATTTAGATGGTCGAGATCTTCATGTTAAACATGAAGCTGGAAATGTTATGA
AAAATGGCGATATTAAGTGCATCGTTGGAGAAGGGATGCCAATTTATAAAAATCCTTTTG
AGAAAGGAGTTCTGTTCATGAATTTCACTGTCGAATTCCCCACGAGCATGGATGTATCAG
TTCTTGCTGAGCTCGAAAAGTGTTTGCCACCGCGACCAGCCTTTGTTATGCCTGACGGTG
AACATGTAGAAGAAGTCAGTTTGTCCGATTATGATCCGCATGCTAGATCAGGAAGAAAGA
AGCATTCAGCAGCTTACAATTCTGATTCTGAAGACGAAGAAAACGGTGGTGCTGGAGGTC
CTGGTGTTCAATGTCGTGCATCGTAAATTATTTAGTAAAACCTTTTTCAAAACACTAAAA
ACAGTAAAAGTGTTGTAATCGCTGGTGAATGGAAATTTTTCGTAAGAAAAAGTATATATT
CTGATTTAATTCTCCATATTTTTTTTTTTATTGCAAATCACCTTCAAGTAACTCATGCTC
AAGCACCAAAATGCGTGAATTTGTAGCGACATTAACATTAATGTCTATTTAGTAAATGCG
ACTTTTTTGCTTTCATATTTTTGATAAATCGAACACAAATAGAATGTTTCAATAATCCTC
CTCAAATATTCCATAATAATTGTAACATTATTTATAATTAAATTTTATTTTTTGATTTGA
TAGTGGCAACAAACACTATGCATAATAATTTATTTCAACAAAATCTCTTTGCCCAGTTAG
TTAAATATCATTAATTTGATATTTAGATAATAAATAAAACAAATTAAAAATTTTAAAAAA
TAATTGAATGAAGAAATCTGACGATAAACATAAAACATATATGATTGTGATTTAGCATTG
AATGAATGATCGTGAAGGAAACAAACAACCATGATTAAATTATAAATTCAGTATATAACA
ATTTATTAATTAATGTCTTAGATAACGTACATTAAAAAACACAATAATCCTTCATCATCT
TTTATGAACAATTCCTTTTTCAATCAGATTGATTTCTCTTAAAAGAAAGAAGGAGAAATG
TACAAGACGAGAAAAAGAAAAAA

>g4617.t5 Gene=g4617 Length=302
MDADNKLYELLNVSRNATDTEIKKSYRKLAMKYHPDKNPNPEEAERFKEITYAYEILSDP
EKRKTYDRYGVKGLQEGGADSSDMFSHIFGSFFGGGSSRSSGPQQCEPIVIQELVTLEDL
YVGGREGHHMPDSVQGDIIVVLKEQAHETFKREGNDLILNETISITQALCGFDLVIKHLD
GRDLHVKHEAGNVMKNGDIKCIVGEGMPIYKNPFEKGVLFMNFTVEFPTSMDVSVLAELE
KCLPPRPAFVMPDGEHVEEVSLSDYDPHARSGRKKHSAAYNSDSEDEENGGAGGPGVQCR
AS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g4617.t5 CDD cd06257 DnaJ 8 59 2.40299E-24
16 g4617.t5 CDD cd10747 DnaJ_C 126 231 3.122E-28
13 g4617.t5 Gene3D G3DSA:1.10.287.110 - 3 105 1.2E-34
14 g4617.t5 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 147 229 1.5E-24
19 g4617.t5 MobiDBLite mobidb-lite consensus disorder prediction 260 302 -
20 g4617.t5 MobiDBLite mobidb-lite consensus disorder prediction 260 283 -
4 g4617.t5 PANTHER PTHR43888 DNAJ-LIKE-2, ISOFORM A-RELATED 3 124 9.5E-81
6 g4617.t5 PANTHER PTHR43888:SF42 DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 2 3 124 9.5E-81
3 g4617.t5 PANTHER PTHR43888 DNAJ-LIKE-2, ISOFORM A-RELATED 125 300 9.5E-81
5 g4617.t5 PANTHER PTHR43888:SF42 DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 2 125 300 9.5E-81
10 g4617.t5 PRINTS PR00625 DnaJ domain signature 8 26 4.2E-29
8 g4617.t5 PRINTS PR00625 DnaJ domain signature 26 41 4.2E-29
7 g4617.t5 PRINTS PR00625 DnaJ domain signature 42 62 4.2E-29
9 g4617.t5 PRINTS PR00625 DnaJ domain signature 62 81 4.2E-29
2 g4617.t5 Pfam PF00226 DnaJ domain 7 67 3.9E-27
1 g4617.t5 Pfam PF01556 DnaJ C terminal domain 126 228 9.6E-22
18 g4617.t5 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 -
21 g4617.t5 ProSiteProfiles PS50076 dnaJ domain profile. 6 70 24.054
17 g4617.t5 SMART SM00271 dnaj_3 5 62 3.0E-29
12 g4617.t5 SUPERFAMILY SSF46565 Chaperone J-domain 6 98 1.22E-33
11 g4617.t5 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 150 231 1.31E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0051082 unfolded protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values