Gene loci information

Transcript annotation

  • This transcript has been annotated as DnaJ homolog subfamily A member 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4617 g4617.t6 TTS g4617.t6 3640449 3640449
chr_2 g4617 g4617.t6 isoform g4617.t6 3640585 3642812
chr_2 g4617 g4617.t6 exon g4617.t6.exon1 3640585 3642075
chr_2 g4617 g4617.t6 cds g4617.t6.CDS1 3641302 3642075
chr_2 g4617 g4617.t6 exon g4617.t6.exon2 3642172 3642441
chr_2 g4617 g4617.t6 cds g4617.t6.CDS2 3642172 3642441
chr_2 g4617 g4617.t6 exon g4617.t6.exon3 3642594 3642675
chr_2 g4617 g4617.t6 cds g4617.t6.CDS3 3642594 3642665
chr_2 g4617 g4617.t6 exon g4617.t6.exon4 3642806 3642812
chr_2 g4617 g4617.t6 TSS g4617.t6 3642963 3642963

Sequences

>g4617.t6 Gene=g4617 Length=1850
ACTAAAGGCAATACGAAATGGATGCGGATAACAAACTATATGAGCTTTTGAATGTATCAA
GGAATGCAACTGATACTGAAATTAAGAAGAGCTATCGAAAGCTGGCAATGAAGTATCATC
CTGATAAAAATCCAAATCCTGAAGAAGCTGAACGATTCAAAGAAATTACATATGCTTACG
AAATCCTCTCAGATCCAGAGAAGAGAAAAACTTACGATCGTTATGGTGTGAAAGGTTTGC
AAGAAGGTGGTGCAGATAGTAGCGATATGTTTAGTCATATTTTTGGTTCATTCTTTGGCG
GAGGAAGTAGTCGGTCATCTGGACCTCAACAATGTGAACCAATTGTAATTCAAGAACTTA
ATGTGAAAAAGTGCAAGGAATGTAGAGGTACAGGCACAAAAGTTATTATTCATCAAATGG
GATTTATGACTCAACAAATTGCAACTAAATGCAATGATTGTGATGGTAGTGGCGAGTTTA
TAGACAAAAAAGATCGTTGTGATGCATGCAAAGGATCAAAAACGGTTGAAGAGAAAAAAG
AGATTACAATTCATATTGATAAGGGCATGAAACATGGACAGAAAATCGTATTTCGTGGTG
AAGGACATCACATGCCAGATTCAGTTCAGGGCGATATTATTGTTGTGCTCAAAGAGCAAG
CACATGAGACATTTAAGCGTGAAGGAAATGACTTAATATTAAATGAGACAATTTCCATAA
CGCAGGCTCTCTGTGGCTTCGACTTAGTGATAAAACATTTAGATGGTCGAGATCTTCATG
TTAAACATGAAGCTGGAAATGTTATGAAAAATGGCGATATTAAGTGCATCGTTGGAGAAG
GGATGCCAATTTATAAAAATCCTTTTGAGAAAGGAGTTCTGTTCATGAATTTCACTGTCG
AATTCCCCACGAGCATGGATGTATCAGTTCTTGCTGAGCTCGAAAAGTGTTTGCCACCGC
GACCAGCCTTTGTTATGCCTGACGGTGAACATGTAGAAGAAGTCAGTTTGTCCGATTATG
ATCCGCATGCTAGATCAGGAAGAAAGAAGCATTCAGCAGCTTACAATTCTGATTCTGAAG
ACGAAGAAAACGGTGGTGCTGGAGGTCCTGGTGTTCAATGTCGTGCATCGTAAATTATTT
AGTAAAACCTTTTTCAAAACACTAAAAACAGTAAAAGTGTTGTAATCGCTGGTGAATGGA
AATTTTTCGTAAGAAAAAGTATATATTCTGATTTAATTCTCCATATTTTTTTTTTTATTG
CAAATCACCTTCAAGTAACTCATGCTCAAGCACCAAAATGCGTGAATTTGTAGCGACATT
AACATTAATGTCTATTTAGTAAATGCGACTTTTTTGCTTTCATATTTTTGATAAATCGAA
CACAAATAGAATGTTTCAATAATCCTCCTCAAATATTCCATAATAATTGTAACATTATTT
ATAATTAAATTTTATTTTTTGATTTGATAGTGGCAACAAACACTATGCATAATAATTTAT
TTCAACAAAATCTCTTTGCCCAGTTAGTTAAATATCATTAATTTGATATTTAGATAATAA
ATAAAACAAATTAAAAATTTTAAAAAATAATTGAATGAAGAAATCTGACGATAAACATAA
AACATATATGATTGTGATTTAGCATTGAATGAATGATCGTGAAGGAAACAAACAACCATG
ATTAAATTATAAATTCAGTATATAACAATTTATTAATTAATGTCTTAGATAACGTACATT
AAAAAACACAATAATCCTTCATCATCTTTTATGAACAATTCCTTTTTCAATCAGATTGAT
TTCTCTTAAAAGAAAGAAGGAGAAATGTACAAGACGAGAAAAAGAAAAAA

>g4617.t6 Gene=g4617 Length=371
MDADNKLYELLNVSRNATDTEIKKSYRKLAMKYHPDKNPNPEEAERFKEITYAYEILSDP
EKRKTYDRYGVKGLQEGGADSSDMFSHIFGSFFGGGSSRSSGPQQCEPIVIQELNVKKCK
ECRGTGTKVIIHQMGFMTQQIATKCNDCDGSGEFIDKKDRCDACKGSKTVEEKKEITIHI
DKGMKHGQKIVFRGEGHHMPDSVQGDIIVVLKEQAHETFKREGNDLILNETISITQALCG
FDLVIKHLDGRDLHVKHEAGNVMKNGDIKCIVGEGMPIYKNPFEKGVLFMNFTVEFPTSM
DVSVLAELEKCLPPRPAFVMPDGEHVEEVSLSDYDPHARSGRKKHSAAYNSDSEDEENGG
AGGPGVQCRAS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g4617.t6 CDD cd06257 DnaJ 8 59 3.62947E-24
18 g4617.t6 CDD cd10719 DnaJ_zf 116 168 6.67925E-14
19 g4617.t6 CDD cd10747 DnaJ_C 169 300 5.30852E-42
15 g4617.t6 Gene3D G3DSA:1.10.287.110 - 3 104 1.7E-34
14 g4617.t6 Gene3D G3DSA:2.10.230.10 - 105 168 3.3E-17
16 g4617.t6 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 216 298 2.1E-24
22 g4617.t6 MobiDBLite mobidb-lite consensus disorder prediction 329 371 -
23 g4617.t6 MobiDBLite mobidb-lite consensus disorder prediction 329 352 -
4 g4617.t6 PANTHER PTHR43888 DNAJ-LIKE-2, ISOFORM A-RELATED 3 100 3.2E-108
5 g4617.t6 PANTHER PTHR43888 DNAJ-LIKE-2, ISOFORM A-RELATED 115 346 3.2E-108
9 g4617.t6 PRINTS PR00625 DnaJ domain signature 8 26 8.2E-29
7 g4617.t6 PRINTS PR00625 DnaJ domain signature 26 41 8.2E-29
6 g4617.t6 PRINTS PR00625 DnaJ domain signature 42 62 8.2E-29
8 g4617.t6 PRINTS PR00625 DnaJ domain signature 62 81 8.2E-29
3 g4617.t6 Pfam PF00226 DnaJ domain 7 67 5.4E-27
2 g4617.t6 Pfam PF00684 DnaJ central domain 106 168 5.5E-13
1 g4617.t6 Pfam PF01556 DnaJ C terminal domain 169 297 8.4E-34
21 g4617.t6 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 -
25 g4617.t6 ProSiteProfiles PS50076 dnaJ domain profile. 6 70 24.054
24 g4617.t6 ProSiteProfiles PS51188 Zinc finger CR-type profile. 78 173 15.549
20 g4617.t6 SMART SM00271 dnaj_3 5 62 3.0E-29
13 g4617.t6 SUPERFAMILY SSF46565 Chaperone J-domain 6 98 1.83E-33
10 g4617.t6 SUPERFAMILY SSF57938 DnaJ/Hsp40 cysteine-rich domain 106 171 7.72E-14
12 g4617.t6 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 145 222 4.32E-11
11 g4617.t6 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 219 300 1.96E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0051082 unfolded protein binding MF
GO:0031072 heat shock protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values