Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DnaJ protein homolog ANJ1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4617 g4617.t8 isoform g4617.t8 3641580 3641966
chr_2 g4617 g4617.t8 exon g4617.t8.exon1 3641580 3641966
chr_2 g4617 g4617.t8 cds g4617.t8.CDS1 3641581 3641868
chr_2 g4617 g4617.t8 TSS g4617.t8 3642963 3642963
chr_2 g4617 g4617.t8 TTS g4617.t8 NA NA

Sequences

>g4617.t8 Gene=g4617 Length=387
GTGGCGAGTTTATAGACAAAAAAGATCGTTGTGATGCATGCAAAGGATCAAAAACGGTTG
AAGAGAAAAAAGAGATTACAATTCATATTGATAAGGGCATGAAACATGGACAGAAAATCG
TATTTCGTGGTGAAGGACATCACATGCCAGATTCAGTTCAGGGCGATATTATTGTTGTGC
TCAAAGAGCAAGCACATGAGACATTTAAGCGTGAAGGAAATGACTTAATATTAAATGAGA
CAATTTCCATAACGCAGGCTCTCTGTGGCTTCGACTTAGTGATAAAACATTTAGATGGTC
GAGATCTTCATGTTAAACATGAAGCTGGAAATGTTATGAAAAATGGCGATATTAAGTGCA
TCGTTGGAGAAGGGATGCCAATTTATA

>g4617.t8 Gene=g4617 Length=96
MKHGQKIVFRGEGHHMPDSVQGDIIVVLKEQAHETFKREGNDLILNETISITQALCGFDL
VIKHLDGRDLHVKHEAGNVMKNGDIKCIVGEGMPIY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4617.t8 CDD cd10747 DnaJ_C 1 96 0e+00
6 g4617.t8 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 1 31 6e-07
5 g4617.t8 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 35 96 0e+00
2 g4617.t8 PANTHER PTHR43888 DNAJ-LIKE-2, ISOFORM A-RELATED 1 96 0e+00
1 g4617.t8 Pfam PF01556 DnaJ C terminal domain 1 96 0e+00
3 g4617.t8 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 1 44 0e+00
4 g4617.t8 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 36 96 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0051082 unfolded protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed