General information for g4623.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxysteroid dehydrogenase-like protein 1.
Parent gene
- The parent gene g4623 is located on chr_2: 3661309..3662176 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4623 | g4623.t2 | TTS | g4623.t2 | 3660496 | 3660496 |
| chr_2 | g4623 | g4623.t2 | isoform | g4623.t2 | 3660633 | 3661309 |
| chr_2 | g4623 | g4623.t2 | exon | g4623.t2.exon1 | 3660633 | 3660737 |
| chr_2 | g4623 | g4623.t2 | cds | g4623.t2.CDS1 | 3660633 | 3660737 |
| chr_2 | g4623 | g4623.t2 | exon | g4623.t2.exon2 | 3660797 | 3660993 |
| chr_2 | g4623 | g4623.t2 | cds | g4623.t2.CDS2 | 3660797 | 3660993 |
| chr_2 | g4623 | g4623.t2 | exon | g4623.t2.exon3 | 3661050 | 3661309 |
| chr_2 | g4623 | g4623.t2 | cds | g4623.t2.CDS3 | 3661050 | 3661221 |
| chr_2 | g4623 | g4623.t2 | TSS | g4623.t2 | 3662315 | 3662315 |
Sequences
>g4623.t2 Gene=g4623 Length=562
TATTGGAATATTGGTTAATAATGTTGGATCATTTCATGAATATCCAGAATATCTTGATAA
AATATCAGAAGATACTTTATGGTCGATAATGAATATTAATGTTGGGGCAATTACAATGAT
GTCAAGAATGATAATTCCACAAATGAAAGCAAATAAAAGAGGAATGATTGTAAATTTATC
ATCAGGCACTCAAACTCAACCAATGCCATTGATGACTATTTATGCAGCAAGTAAAATTTA
TGTTACTAATTTCACTTTAGCACTTCAAAAAGAACTCAAAAAGTACAATGTTGAAGTTCA
GTTATTATCACCTATGTTTGTTAAAACTAAAATGTTAAATTCAGACAGATTAAATGAAAA
TCCATTTGTCACAAATGTGGAAAAGTATACTCGACATGCTGTGTTTACACTTGGAAAAAG
TTCACAAACAACCGGCTATTGGGAACATGCAATTCAAGTTGCATTTATTAAAATTGTTCC
ACAAGTTTTAAGAACACAATGTGCATGGATCACAGCAAGATTTATGAAGGCAGAATATCT
TCAGAAACAAAAACTGTCATAA
>g4623.t2 Gene=g4623 Length=157
MNINVGAITMMSRMIIPQMKANKRGMIVNLSSGTQTQPMPLMTIYAASKIYVTNFTLALQ
KELKKYNVEVQLLSPMFVKTKMLNSDRLNENPFVTNVEKYTRHAVFTLGKSSQTTGYWEH
AIQVAFIKIVPQVLRTQCAWITARFMKAEYLQKQKLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g4623.t2 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 135 | 2.0E-22 |
| 2 | g4623.t2 | PANTHER | PTHR43899:SF9 | MIP25013P-RELATED | 1 | 155 | 3.2E-52 |
| 3 | g4623.t2 | PANTHER | PTHR43899 | RH59310P | 1 | 155 | 3.2E-52 |
| 6 | g4623.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 19 | 35 | 3.6E-7 |
| 4 | g4623.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 45 | 64 | 3.6E-7 |
| 5 | g4623.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 66 | 83 | 3.6E-7 |
| 1 | g4623.t2 | Pfam | PF00106 | short chain dehydrogenase | 1 | 88 | 2.7E-21 |
| 8 | g4623.t2 | ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 32 | 60 | - |
| 7 | g4623.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 143 | 3.6E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed