Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein disulfide-isomerase A6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4631 g4631.t1 TSS g4631.t1 3794570 3794570
chr_2 g4631 g4631.t1 isoform g4631.t1 3794714 3796281
chr_2 g4631 g4631.t1 exon g4631.t1.exon1 3794714 3794735
chr_2 g4631 g4631.t1 cds g4631.t1.CDS1 3794714 3794735
chr_2 g4631 g4631.t1 exon g4631.t1.exon2 3794816 3794934
chr_2 g4631 g4631.t1 cds g4631.t1.CDS2 3794816 3794934
chr_2 g4631 g4631.t1 exon g4631.t1.exon3 3795022 3795047
chr_2 g4631 g4631.t1 cds g4631.t1.CDS3 3795022 3795047
chr_2 g4631 g4631.t1 exon g4631.t1.exon4 3795162 3796281
chr_2 g4631 g4631.t1 cds g4631.t1.CDS4 3795162 3796281
chr_2 g4631 g4631.t1 TTS g4631.t1 3796427 3796427

Sequences

>g4631.t1 Gene=g4631 Length=1287
ATGTTAAATTTAAAGAGTTTTGGTTTACTATTACTATTAATTCAATTGTCTGTGGCATTA
TACGATTCTAAAGATGAGGTTGTTGAATTAACACCATCAAATTTCGATAGATTAGTTACA
AAAGGCGATGAAGTTTGGATAGTCGAATTTTTCGCTCCGTGGTGTGGTCATTGTAAAAGT
TTAGCTCCTGAATATAAGAAAGCTGCAAAGGCATTAAAGGGTGTAGTAAAAGTAGGAGCA
GTTGATTGTGATCAACATAAAGAATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAACG
ATCAAAATTTTCACTGGAAAACAATCGACTGATTATCAAGGACAGCGTGATGCTAAAGGA
ATCGCTGAAGCAGGTCTAGCTGCAGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAAA
TCAAATGGAGGAAGCAGCAGCAGTGGTGGAAGTGATGACGTTGTTGAACTTACAGAATCA
AACTTTAACAAATTAGTTCTTAATAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCCT
TGGTGTGGCCATTGTAAAAACTTACATCCAGAATGGGACAAAGCTGCAACTCAACTTAAA
GGAAAAGTTAAAGTTGGTCGTGTTGATGCTACTGTTGAACAATCATTAGCACAAAAATAC
GACATTAAAGGATTTCCTACTATCAAGATCTTTAAAGGAGGAAAGGTTGAAGATTACGAA
GGAGGTCGCACTGCTAGCAGTATTGTCGAAACTGCTCTCACCTATTACACTGAAAATATA
CCAACACCAGAAGTTTATGAGTTAATCTCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAAT
AAACCATTGTGTGTGATTTCAGTGCTTCCAAATATTTATGATTGCACAGCCACATGTCGC
AATGATTTATTGAAAATGTTGGCTGAACAAGCAGATAAATTTAAACAAAAGAATTGGGGT
TGGTTATGGACTGAGGGAGGAAAGCAATCGGCTGTTGAAGAAGCACTTGATATTGGTGGA
TTCGGTTATCCTGCTATGGCTGCAGTAAATATCAAGAAAATGAAATACTCAATCCTACGT
GGCTCATTCTCAAAGGATGGTGTATACGAATTCTTACGTGATTTATCATTCGGTCGTGGA
AATACTTCTCCAGTTAAAGGCGCTGAAATGCCAAAAATTAATACCCTTGAACCATGGGAT
GGAAAAGATGGTGAGCCAATTCTAGAAGAAGACATTGATTTGTCTGATGTTGAACTTGAC
GATCTCGATCCAAAAGATGAACTGTAA

>g4631.t1 Gene=g4631 Length=428
MLNLKSFGLLLLLIQLSVALYDSKDEVVELTPSNFDRLVTKGDEVWIVEFFAPWCGHCKS
LAPEYKKAAKALKGVVKVGAVDCDQHKELAGQFNIRGFPTIKIFTGKQSTDYQGQRDAKG
IAEAGLAAAKKKVKEQLGEKSNGGSSSSGGSDDVVELTESNFNKLVLNSEDVWFVAFIAP
WCGHCKNLHPEWDKAATQLKGKVKVGRVDATVEQSLAQKYDIKGFPTIKIFKGGKVEDYE
GGRTASSIVETALTYYTENIPTPEVYELISEEAAKKACENKPLCVISVLPNIYDCTATCR
NDLLKMLAEQADKFKQKNWGWLWTEGGKQSAVEEALDIGGFGYPAMAAVNIKKMKYSILR
GSFSKDGVYEFLRDLSFGRGNTSPVKGAEMPKINTLEPWDGKDGEPILEEDIDLSDVELD
DLDPKDEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
24 g4631.t1 CDD cd03001 PDI_a_P5 26 126 6.55362E-58
23 g4631.t1 CDD cd03001 PDI_a_P5 153 253 1.19466E-57
25 g4631.t1 CDD cd02983 P5_C 263 391 1.16571E-63
17 g4631.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 15 141 9.6E-42
16 g4631.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 142 285 3.5E-40
4 g4631.t1 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 10 138 6.1E-145
7 g4631.t1 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 10 138 6.1E-145
5 g4631.t1 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 150 254 6.1E-145
8 g4631.t1 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 150 254 6.1E-145
3 g4631.t1 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 234 428 6.1E-145
6 g4631.t1 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 234 428 6.1E-145
11 g4631.t1 PRINTS PR00421 Thioredoxin family signature 46 54 2.3E-7
9 g4631.t1 PRINTS PR00421 Thioredoxin family signature 54 63 2.3E-7
10 g4631.t1 PRINTS PR00421 Thioredoxin family signature 221 232 2.3E-7
1 g4631.t1 Pfam PF00085 Thioredoxin 27 123 4.2E-30
2 g4631.t1 Pfam PF00085 Thioredoxin 154 251 2.5E-30
19 g4631.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
20 g4631.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
21 g4631.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 14 -
22 g4631.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
18 g4631.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 428 -
27 g4631.t1 ProSitePatterns PS00194 Thioredoxin family active site. 47 65 -
31 g4631.t1 ProSiteProfiles PS51352 Thioredoxin domain profile. 9 131 15.586
30 g4631.t1 ProSiteProfiles PS51352 Thioredoxin domain profile. 135 258 14.051
13 g4631.t1 SUPERFAMILY SSF52833 Thioredoxin-like 19 123 1.31E-35
12 g4631.t1 SUPERFAMILY SSF52833 Thioredoxin-like 150 254 4.95E-37
14 g4631.t1 SUPERFAMILY SSF52833 Thioredoxin-like 265 378 1.18E-8
15 g4631.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -
26 g4631.t1 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 21 -
28 g4631.t1 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 30 123 1.1E-32
29 g4631.t1 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 157 250 5.2E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003756 protein disulfide isomerase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values