General information for g4631.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein disulfide-isomerase A6.
Parent gene
- The parent gene g4631 is located on chr_2: 3796281..3798115 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4631 | g4631.t17 | TSS | g4631.t17 | 3794570 | 3794570 |
| chr_2 | g4631 | g4631.t17 | isoform | g4631.t17 | 3794714 | 3796281 |
| chr_2 | g4631 | g4631.t17 | exon | g4631.t17.exon1 | 3794714 | 3794735 |
| chr_2 | g4631 | g4631.t17 | exon | g4631.t17.exon2 | 3794816 | 3794934 |
| chr_2 | g4631 | g4631.t17 | exon | g4631.t17.exon3 | 3795135 | 3796281 |
| chr_2 | g4631 | g4631.t17 | cds | g4631.t17.CDS1 | 3795910 | 3796281 |
| chr_2 | g4631 | g4631.t17 | TTS | g4631.t17 | 3796427 | 3796427 |
Sequences
>g4631.t17 Gene=g4631 Length=1288
ATGTTAAATTTAAAGAGTTTTGGTTTACTATTACTATTAATTCAATTGTCTGTGGCATTA
TACGATTCTAAAGATGAGGTTGTTGAATTAACACCATCAAATTTCGATAGATTAGTTACA
AAAGGCGATGAAGTTTGGATAATGAACAATAAATTTCACAATTAATAGTCATTGTAAAAG
TTTAGCTCCTGAATATAAGAAAGCTGCAAAGGCATTAAAGGGTGTAGTAAAAGTAGGAGC
AGTTGATTGTGATCAACATAAAGAATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAAC
GATCAAAATTTTCACTGGAAAACAATCGACTGATTATCAAGGACAGCGTGATGCTAAAGG
AATCGCTGAAGCAGGTCTAGCTGCAGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAA
ATCAAATGGAGGAAGCAGCAGCAGTGGTGGAAGTGATGACGTTGTTGAACTTACAGAATC
AAACTTTAACAAATTAGTTCTTAATAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCC
TTGGTGTGGCCATTGTAAAAACTTACATCCAGAATGGGACAAAGCTGCAACTCAACTTAA
AGGAAAAGTTAAAGTTGGTCGTGTTGATGCTACTGTTGAACAATCATTAGCACAAAAATA
CGACATTAAAGGATTTCCTACTATCAAGATCTTTAAAGGAGGAAAGGTTGAAGATTACGA
AGGAGGTCGCACTGCTAGCAGTATTGTCGAAACTGCTCTCACCTATTACACTGAAAATAT
ACCAACACCAGAAGTTTATGAGTTAATCTCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAA
TAAACCATTGTGTGTGATTTCAGTGCTTCCAAATATTTATGATTGCACAGCCACATGTCG
CAATGATTTATTGAAAATGTTGGCTGAACAAGCAGATAAATTTAAACAAAAGAATTGGGG
TTGGTTATGGACTGAGGGAGGAAAGCAATCGGCTGTTGAAGAAGCACTTGATATTGGTGG
ATTCGGTTATCCTGCTATGGCTGCAGTAAATATCAAGAAAATGAAATACTCAATCCTACG
TGGCTCATTCTCAAAGGATGGTGTATACGAATTCTTACGTGATTTATCATTCGGTCGTGG
AAATACTTCTCCAGTTAAAGGCGCTGAAATGCCAAAAATTAATACCCTTGAACCATGGGA
TGGAAAAGATGGTGAGCCAATTCTAGAAGAAGACATTGATTTGTCTGATGTTGAACTTGA
CGATCTCGATCCAAAAGATGAACTGTAA
>g4631.t17 Gene=g4631 Length=123
MLAEQADKFKQKNWGWLWTEGGKQSAVEEALDIGGFGYPAMAAVNIKKMKYSILRGSFSK
DGVYEFLRDLSFGRGNTSPVKGAEMPKINTLEPWDGKDGEPILEEDIDLSDVELDDLDPK
DEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4631.t17 | PANTHER | PTHR45815 | PROTEIN DISULFIDE-ISOMERASE A6 | 1 | 114 | 0.00e+00 |
| g4631.t17 | PANTHER | PTHR45815:SF2 | PROTEIN CBG11768 | 1 | 114 | 0.00e+00 |
| g4631.t17 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 73 | 1.23e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed