Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein disulfide-isomerase A6-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4631 g4631.t25 TSS g4631.t25 3794570 3794570
chr_2 g4631 g4631.t25 isoform g4631.t25 3794714 3796281
chr_2 g4631 g4631.t25 exon g4631.t25.exon1 3794714 3794735
chr_2 g4631 g4631.t25 cds g4631.t25.CDS1 3794714 3794735
chr_2 g4631 g4631.t25 exon g4631.t25.exon2 3794816 3794934
chr_2 g4631 g4631.t25 cds g4631.t25.CDS2 3794816 3794934
chr_2 g4631 g4631.t25 exon g4631.t25.exon3 3794989 3795047
chr_2 g4631 g4631.t25 cds g4631.t25.CDS3 3794989 3795047
chr_2 g4631 g4631.t25 exon g4631.t25.exon4 3795162 3796281
chr_2 g4631 g4631.t25 cds g4631.t25.CDS4 3795162 3796281
chr_2 g4631 g4631.t25 TTS g4631.t25 3796427 3796427

Sequences

>g4631.t25 Gene=g4631 Length=1320
ATGTTAAATTTAAAGAGTTTTGGTTTACTATTACTATTAATTCAATTGTCTGTGGCATTA
TACGATTCTAAAGATGAGGTTGTTGAATTAACACCATCAAATTTCGATAGATTAGTTACA
AAAGGCGATGAAGTTTGGATATACTTCTTTTTATCATTAATTTTATTCATAAAGGTCGAA
TTTTTCGCTCCGTGGTGTGGTCATTGTAAAAGTTTAGCTCCTGAATATAAGAAAGCTGCA
AAGGCATTAAAGGGTGTAGTAAAAGTAGGAGCAGTTGATTGTGATCAACATAAAGAATTA
GCTGGTCAATTCAATATCCGTGGTTTCCCAACGATCAAAATTTTCACTGGAAAACAATCG
ACTGATTATCAAGGACAGCGTGATGCTAAAGGAATCGCTGAAGCAGGTCTAGCTGCAGCA
AAGAAGAAGGTCAAAGAACAATTGGGCGAAAAATCAAATGGAGGAAGCAGCAGCAGTGGT
GGAAGTGATGACGTTGTTGAACTTACAGAATCAAACTTTAACAAATTAGTTCTTAATAGC
GAAGATGTATGGTTTGTCGCTTTCATAGCTCCTTGGTGTGGCCATTGTAAAAACTTACAT
CCAGAATGGGACAAAGCTGCAACTCAACTTAAAGGAAAAGTTAAAGTTGGTCGTGTTGAT
GCTACTGTTGAACAATCATTAGCACAAAAATACGACATTAAAGGATTTCCTACTATCAAG
ATCTTTAAAGGAGGAAAGGTTGAAGATTACGAAGGAGGTCGCACTGCTAGCAGTATTGTC
GAAACTGCTCTCACCTATTACACTGAAAATATACCAACACCAGAAGTTTATGAGTTAATC
TCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAATAAACCATTGTGTGTGATTTCAGTGCTT
CCAAATATTTATGATTGCACAGCCACATGTCGCAATGATTTATTGAAAATGTTGGCTGAA
CAAGCAGATAAATTTAAACAAAAGAATTGGGGTTGGTTATGGACTGAGGGAGGAAAGCAA
TCGGCTGTTGAAGAAGCACTTGATATTGGTGGATTCGGTTATCCTGCTATGGCTGCAGTA
AATATCAAGAAAATGAAATACTCAATCCTACGTGGCTCATTCTCAAAGGATGGTGTATAC
GAATTCTTACGTGATTTATCATTCGGTCGTGGAAATACTTCTCCAGTTAAAGGCGCTGAA
ATGCCAAAAATTAATACCCTTGAACCATGGGATGGAAAAGATGGTGAGCCAATTCTAGAA
GAAGACATTGATTTGTCTGATGTTGAACTTGACGATCTCGATCCAAAAGATGAACTGTAA

>g4631.t25 Gene=g4631 Length=439
MLNLKSFGLLLLLIQLSVALYDSKDEVVELTPSNFDRLVTKGDEVWIYFFLSLILFIKVE
FFAPWCGHCKSLAPEYKKAAKALKGVVKVGAVDCDQHKELAGQFNIRGFPTIKIFTGKQS
TDYQGQRDAKGIAEAGLAAAKKKVKEQLGEKSNGGSSSSGGSDDVVELTESNFNKLVLNS
EDVWFVAFIAPWCGHCKNLHPEWDKAATQLKGKVKVGRVDATVEQSLAQKYDIKGFPTIK
IFKGGKVEDYEGGRTASSIVETALTYYTENIPTPEVYELISEEAAKKACENKPLCVISVL
PNIYDCTATCRNDLLKMLAEQADKFKQKNWGWLWTEGGKQSAVEEALDIGGFGYPAMAAV
NIKKMKYSILRGSFSKDGVYEFLRDLSFGRGNTSPVKGAEMPKINTLEPWDGKDGEPILE
EDIDLSDVELDDLDPKDEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g4631.t25 CDD cd03001 PDI_a_P5 26 137 1.26359E-54
25 g4631.t25 CDD cd03001 PDI_a_P5 164 264 1.22238E-57
27 g4631.t25 CDD cd02983 P5_C 274 402 1.94726E-63
16 g4631.t25 Gene3D G3DSA:3.40.30.10 Glutaredoxin 15 152 2.4E-37
17 g4631.t25 Gene3D G3DSA:3.40.30.10 Glutaredoxin 153 297 3.8E-40
5 g4631.t25 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 10 149 1.8E-139
8 g4631.t25 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 10 149 1.8E-139
3 g4631.t25 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 161 265 1.8E-139
6 g4631.t25 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 161 265 1.8E-139
4 g4631.t25 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 247 439 1.8E-139
7 g4631.t25 PANTHER PTHR45815:SF3 PROTEIN DISULFIDE-ISOMERASE A6 247 439 1.8E-139
11 g4631.t25 PRINTS PR00421 Thioredoxin family signature 57 65 2.8E-7
9 g4631.t25 PRINTS PR00421 Thioredoxin family signature 65 74 2.8E-7
10 g4631.t25 PRINTS PR00421 Thioredoxin family signature 232 243 2.8E-7
2 g4631.t25 Pfam PF00085 Thioredoxin 28 134 6.2E-25
1 g4631.t25 Pfam PF00085 Thioredoxin 165 262 2.7E-30
20 g4631.t25 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
21 g4631.t25 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
22 g4631.t25 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 14 -
24 g4631.t25 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
19 g4631.t25 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 44 -
23 g4631.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 45 67 -
18 g4631.t25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 68 439 -
30 g4631.t25 ProSiteProfiles PS51352 Thioredoxin domain profile. 19 132 10.285
29 g4631.t25 ProSiteProfiles PS51352 Thioredoxin domain profile. 133 269 14.587
14 g4631.t25 SUPERFAMILY SSF52833 Thioredoxin-like 19 134 2.25E-30
13 g4631.t25 SUPERFAMILY SSF52833 Thioredoxin-like 161 265 5.28E-37
12 g4631.t25 SUPERFAMILY SSF52833 Thioredoxin-like 276 389 1.26E-8
15 g4631.t25 SignalP_EUK SignalP-TM SignalP-TM 1 19 -
28 g4631.t25 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 168 261 5.4E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003756 protein disulfide isomerase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values