General information for g4631.t27
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein disulfide-isomerase A6.
Parent gene
- The parent gene g4631 is located on chr_2: 3796281..3798115 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4631 | g4631.t27 | TSS | g4631.t27 | 3794570 | 3794570 |
| chr_2 | g4631 | g4631.t27 | isoform | g4631.t27 | 3794714 | 3796281 |
| chr_2 | g4631 | g4631.t27 | exon | g4631.t27.exon1 | 3794714 | 3795047 |
| chr_2 | g4631 | g4631.t27 | exon | g4631.t27.exon2 | 3795162 | 3796281 |
| chr_2 | g4631 | g4631.t27 | cds | g4631.t27.CDS1 | 3795910 | 3796281 |
| chr_2 | g4631 | g4631.t27 | TTS | g4631.t27 | 3796427 | 3796427 |
Sequences
>g4631.t27 Gene=g4631 Length=1454
ATGTTAAATTTAAAGAGTTTTGGTAAGAAATTTCGAGATAATTTGCACCGGTTGTGCTTT
TCTACTTTTTCTTTCTCCTTTTCTCCCATGATTGTAAAATAGGTTTACTATTACTATTAA
TTCAATTGTCTGTGGCATTATACGATTCTAAAGATGAGGTTGTTGAATTAACACCATCAA
ATTTCGATAGATTAGTTACAAAAGGCGATGAAGTTTGGATAGTAAGTATTTAAATTCCTT
ATCTCACTTCCAGAACATATAAATAATCAATTTATTACTTCTTTTTATCATTAATTTTAT
TCATAAAGGTCGAATTTTTCGCTCCGTGGTGTGGTCATTGTAAAAGTTTAGCTCCTGAAT
ATAAGAAAGCTGCAAAGGCATTAAAGGGTGTAGTAAAAGTAGGAGCAGTTGATTGTGATC
AACATAAAGAATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAACGATCAAAATTTTCA
CTGGAAAACAATCGACTGATTATCAAGGACAGCGTGATGCTAAAGGAATCGCTGAAGCAG
GTCTAGCTGCAGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAAATCAAATGGAGGAA
GCAGCAGCAGTGGTGGAAGTGATGACGTTGTTGAACTTACAGAATCAAACTTTAACAAAT
TAGTTCTTAATAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCCTTGGTGTGGCCATT
GTAAAAACTTACATCCAGAATGGGACAAAGCTGCAACTCAACTTAAAGGAAAAGTTAAAG
TTGGTCGTGTTGATGCTACTGTTGAACAATCATTAGCACAAAAATACGACATTAAAGGAT
TTCCTACTATCAAGATCTTTAAAGGAGGAAAGGTTGAAGATTACGAAGGAGGTCGCACTG
CTAGCAGTATTGTCGAAACTGCTCTCACCTATTACACTGAAAATATACCAACACCAGAAG
TTTATGAGTTAATCTCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAATAAACCATTGTGTG
TGATTTCAGTGCTTCCAAATATTTATGATTGCACAGCCACATGTCGCAATGATTTATTGA
AAATGTTGGCTGAACAAGCAGATAAATTTAAACAAAAGAATTGGGGTTGGTTATGGACTG
AGGGAGGAAAGCAATCGGCTGTTGAAGAAGCACTTGATATTGGTGGATTCGGTTATCCTG
CTATGGCTGCAGTAAATATCAAGAAAATGAAATACTCAATCCTACGTGGCTCATTCTCAA
AGGATGGTGTATACGAATTCTTACGTGATTTATCATTCGGTCGTGGAAATACTTCTCCAG
TTAAAGGCGCTGAAATGCCAAAAATTAATACCCTTGAACCATGGGATGGAAAAGATGGTG
AGCCAATTCTAGAAGAAGACATTGATTTGTCTGATGTTGAACTTGACGATCTCGATCCAA
AAGATGAACTGTAA
>g4631.t27 Gene=g4631 Length=123
MLAEQADKFKQKNWGWLWTEGGKQSAVEEALDIGGFGYPAMAAVNIKKMKYSILRGSFSK
DGVYEFLRDLSFGRGNTSPVKGAEMPKINTLEPWDGKDGEPILEEDIDLSDVELDDLDPK
DEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4631.t27 | PANTHER | PTHR45815 | PROTEIN DISULFIDE-ISOMERASE A6 | 1 | 114 | 0.00e+00 |
| g4631.t27 | PANTHER | PTHR45815:SF2 | PROTEIN CBG11768 | 1 | 114 | 0.00e+00 |
| g4631.t27 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 73 | 1.23e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
