Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein disulfide-isomerase A6-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4631 g4631.t28 TSS g4631.t28 3794570 3794570
chr_2 g4631 g4631.t28 isoform g4631.t28 3794817 3795896
chr_2 g4631 g4631.t28 exon g4631.t28.exon1 3794817 3794934
chr_2 g4631 g4631.t28 cds g4631.t28.CDS1 3794818 3794934
chr_2 g4631 g4631.t28 exon g4631.t28.exon2 3795022 3795047
chr_2 g4631 g4631.t28 cds g4631.t28.CDS2 3795022 3795047
chr_2 g4631 g4631.t28 exon g4631.t28.exon3 3795162 3795896
chr_2 g4631 g4631.t28 cds g4631.t28.CDS3 3795162 3795894
chr_2 g4631 g4631.t28 TTS g4631.t28 3796427 3796427

Sequences

>g4631.t28 Gene=g4631 Length=879
TTTACTATTACTATTAATTCAATTGTCTGTGGCATTATACGATTCTAAAGATGAGGTTGT
TGAATTAACACCATCAAATTTCGATAGATTAGTTACAAAAGGCGATGAAGTTTGGATAGT
CGAATTTTTCGCTCCGTGGTGTGGTCATTGTAAAAGTTTAGCTCCTGAATATAAGAAAGC
TGCAAAGGCATTAAAGGGTGTAGTAAAAGTAGGAGCAGTTGATTGTGATCAACATAAAGA
ATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAACGATCAAAATTTTCACTGGAAAACA
ATCGACTGATTATCAAGGACAGCGTGATGCTAAAGGAATCGCTGAAGCAGGTCTAGCTGC
AGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAAATCAAATGGAGGAAGCAGCAGCAG
TGGTGGAAGTGATGACGTTGTTGAACTTACAGAATCAAACTTTAACAAATTAGTTCTTAA
TAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCCTTGGTGTGGCCATTGTAAAAACTT
ACATCCAGAATGGGACAAAGCTGCAACTCAACTTAAAGGAAAAGTTAAAGTTGGTCGTGT
TGATGCTACTGTTGAACAATCATTAGCACAAAAATACGACATTAAAGGATTTCCTACTAT
CAAGATCTTTAAAGGAGGAAAGGTTGAAGATTACGAAGGAGGTCGCACTGCTAGCAGTAT
TGTCGAAACTGCTCTCACCTATTACACTGAAAATATACCAACACCAGAAGTTTATGAGTT
AATCTCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAATAAACCATTGTGTGTGATTTCAGT
GCTTCCAAATATTTATGATTGCACAGCCACATGTCGCAA

>g4631.t28 Gene=g4631 Length=292
LLLLLIQLSVALYDSKDEVVELTPSNFDRLVTKGDEVWIVEFFAPWCGHCKSLAPEYKKA
AKALKGVVKVGAVDCDQHKELAGQFNIRGFPTIKIFTGKQSTDYQGQRDAKGIAEAGLAA
AKKKVKEQLGEKSNGGSSSSGGSDDVVELTESNFNKLVLNSEDVWFVAFIAPWCGHCKNL
HPEWDKAATQLKGKVKVGRVDATVEQSLAQKYDIKGFPTIKIFKGGKVEDYEGGRTASSI
VETALTYYTENIPTPEVYELISEEAAKKACENKPLCVISVLPNIYDCTATCR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g4631.t28 CDD cd03001 PDI_a_P5 18 118 1.01513E-58
15 g4631.t28 CDD cd03001 PDI_a_P5 145 245 1.78626E-58
13 g4631.t28 Gene3D G3DSA:3.40.30.10 Glutaredoxin 7 133 4.3E-42
12 g4631.t28 Gene3D G3DSA:3.40.30.10 Glutaredoxin 134 278 1.5E-40
4 g4631.t28 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 2 130 3.2E-112
5 g4631.t28 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 142 248 3.2E-112
3 g4631.t28 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 228 292 3.2E-112
6 g4631.t28 PRINTS PR00421 Thioredoxin family signature 38 46 8.8E-8
7 g4631.t28 PRINTS PR00421 Thioredoxin family signature 46 55 8.8E-8
8 g4631.t28 PRINTS PR00421 Thioredoxin family signature 213 224 8.8E-8
1 g4631.t28 Pfam PF00085 Thioredoxin 19 115 2.1E-30
2 g4631.t28 Pfam PF00085 Thioredoxin 146 243 1.2E-30
16 g4631.t28 ProSitePatterns PS00194 Thioredoxin family active site. 39 57 -
19 g4631.t28 ProSiteProfiles PS51352 Thioredoxin domain profile. 1 123 15.586
20 g4631.t28 ProSiteProfiles PS51352 Thioredoxin domain profile. 127 250 14.051
10 g4631.t28 SUPERFAMILY SSF52833 Thioredoxin-like 11 115 6.26E-36
9 g4631.t28 SUPERFAMILY SSF52833 Thioredoxin-like 142 246 2.32E-37
11 g4631.t28 SignalP_EUK SignalP-noTM SignalP-noTM 1 11 -
17 g4631.t28 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 22 115 5.2E-33
18 g4631.t28 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 149 242 2.5E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003756 protein disulfide isomerase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values