General information for g4631.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein disulfide-isomerase A6.
Parent gene
- The parent gene g4631 is located on chr_2: 3796281..3798115 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4631 | g4631.t4 | isoform | g4631.t4 | 3794561 | 3796281 |
| chr_2 | g4631 | g4631.t4 | exon | g4631.t4.exon1 | 3794561 | 3794681 |
| chr_2 | g4631 | g4631.t4 | TSS | g4631.t4 | 3794570 | 3794570 |
| chr_2 | g4631 | g4631.t4 | exon | g4631.t4.exon2 | 3794816 | 3794934 |
| chr_2 | g4631 | g4631.t4 | exon | g4631.t4.exon3 | 3795022 | 3795047 |
| chr_2 | g4631 | g4631.t4 | exon | g4631.t4.exon4 | 3795162 | 3796281 |
| chr_2 | g4631 | g4631.t4 | cds | g4631.t4.CDS1 | 3795910 | 3796281 |
| chr_2 | g4631 | g4631.t4 | TTS | g4631.t4 | 3796427 | 3796427 |
Sequences
>g4631.t4 Gene=g4631 Length=1386
AACGAACCAAGTTGTCGTATACTCAAGTCGTGAATTGTCTAGACACAAATATATTTTTAA
AAATCATTTCCATTAGTTTTATATAAAGAAAAGAAGCAGCACAAGAATAAAACTCATAGT
TGTTTACTATTACTATTAATTCAATTGTCTGTGGCATTATACGATTCTAAAGATGAGGTT
GTTGAATTAACACCATCAAATTTCGATAGATTAGTTACAAAAGGCGATGAAGTTTGGATA
GTCGAATTTTTCGCTCCGTGGTGTGGTCATTGTAAAAGTTTAGCTCCTGAATATAAGAAA
GCTGCAAAGGCATTAAAGGGTGTAGTAAAAGTAGGAGCAGTTGATTGTGATCAACATAAA
GAATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAACGATCAAAATTTTCACTGGAAAA
CAATCGACTGATTATCAAGGACAGCGTGATGCTAAAGGAATCGCTGAAGCAGGTCTAGCT
GCAGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAAATCAAATGGAGGAAGCAGCAGC
AGTGGTGGAAGTGATGACGTTGTTGAACTTACAGAATCAAACTTTAACAAATTAGTTCTT
AATAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCCTTGGTGTGGCCATTGTAAAAAC
TTACATCCAGAATGGGACAAAGCTGCAACTCAACTTAAAGGAAAAGTTAAAGTTGGTCGT
GTTGATGCTACTGTTGAACAATCATTAGCACAAAAATACGACATTAAAGGATTTCCTACT
ATCAAGATCTTTAAAGGAGGAAAGGTTGAAGATTACGAAGGAGGTCGCACTGCTAGCAGT
ATTGTCGAAACTGCTCTCACCTATTACACTGAAAATATACCAACACCAGAAGTTTATGAG
TTAATCTCAGAAGAGGCTGCCAAGAAAGCTTGTGAAAATAAACCATTGTGTGTGATTTCA
GTGCTTCCAAATATTTATGATTGCACAGCCACATGTCGCAATGATTTATTGAAAATGTTG
GCTGAACAAGCAGATAAATTTAAACAAAAGAATTGGGGTTGGTTATGGACTGAGGGAGGA
AAGCAATCGGCTGTTGAAGAAGCACTTGATATTGGTGGATTCGGTTATCCTGCTATGGCT
GCAGTAAATATCAAGAAAATGAAATACTCAATCCTACGTGGCTCATTCTCAAAGGATGGT
GTATACGAATTCTTACGTGATTTATCATTCGGTCGTGGAAATACTTCTCCAGTTAAAGGC
GCTGAAATGCCAAAAATTAATACCCTTGAACCATGGGATGGAAAAGATGGTGAGCCAATT
CTAGAAGAAGACATTGATTTGTCTGATGTTGAACTTGACGATCTCGATCCAAAAGATGAA
CTGTAA
>g4631.t4 Gene=g4631 Length=123
MLAEQADKFKQKNWGWLWTEGGKQSAVEEALDIGGFGYPAMAAVNIKKMKYSILRGSFSK
DGVYEFLRDLSFGRGNTSPVKGAEMPKINTLEPWDGKDGEPILEEDIDLSDVELDDLDPK
DEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4631.t4 | PANTHER | PTHR45815 | PROTEIN DISULFIDE-ISOMERASE A6 | 1 | 114 | 0.00e+00 |
| g4631.t4 | PANTHER | PTHR45815:SF2 | PROTEIN CBG11768 | 1 | 114 | 0.00e+00 |
| g4631.t4 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 73 | 1.23e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
