Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein disulfide-isomerase A6-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4631 g4631.t6 TSS g4631.t6 3794570 3794570
chr_2 g4631 g4631.t6 isoform g4631.t6 3794714 3795649
chr_2 g4631 g4631.t6 exon g4631.t6.exon1 3794714 3794735
chr_2 g4631 g4631.t6 cds g4631.t6.CDS1 3794714 3794735
chr_2 g4631 g4631.t6 exon g4631.t6.exon2 3794816 3794938
chr_2 g4631 g4631.t6 cds g4631.t6.CDS2 3794816 3794938
chr_2 g4631 g4631.t6 exon g4631.t6.exon3 3795221 3795649
chr_2 g4631 g4631.t6 cds g4631.t6.CDS3 3795221 3795648
chr_2 g4631 g4631.t6 TTS g4631.t6 3796427 3796427

Sequences

>g4631.t6 Gene=g4631 Length=574
ATGTTAAATTTAAAGAGTTTTGGTTTACTATTACTATTAATTCAATTGTCTGTGGCATTA
TACGATTCTAAAGATGAGGTTGTTGAATTAACACCATCAAATTTCGATAGATTAGTTACA
AAAGGCGATGAAGTTTGGATAGTAATAAAAGTAGGAGCAGTTGATTGTGATCAACATAAA
GAATTAGCTGGTCAATTCAATATCCGTGGTTTCCCAACGATCAAAATTTTCACTGGAAAA
CAATCGACTGATTATCAAGGACAGCGTGATGCTAAAGGAATCGCTGAAGCAGGTCTAGCT
GCAGCAAAGAAGAAGGTCAAAGAACAATTGGGCGAAAAATCAAATGGAGGAAGCAGCAGC
AGTGGTGGAAGTGATGACGTTGTTGAACTTACAGAATCAAACTTTAACAAATTAGTTCTT
AATAGCGAAGATGTATGGTTTGTCGCTTTCATAGCTCCTTGGTGTGGCCATTGTAAAAAC
TTACATCCAGAATGGGACAAAGCTGCAACTCAACTTAAAGGAAAAGTTAAAGTTGGTCGT
GTTGATGCTACTGTTGAACAATCATTAGCACAAA

>g4631.t6 Gene=g4631 Length=191
MLNLKSFGLLLLLIQLSVALYDSKDEVVELTPSNFDRLVTKGDEVWIVIKVGAVDCDQHK
ELAGQFNIRGFPTIKIFTGKQSTDYQGQRDAKGIAEAGLAAAKKKVKEQLGEKSNGGSSS
SGGSDDVVELTESNFNKLVLNSEDVWFVAFIAPWCGHCKNLHPEWDKAATQLKGKVKVGR
VDATVEQSLAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g4631.t6 Gene3D G3DSA:3.40.30.10 Glutaredoxin 47 97 9.4E-15
10 g4631.t6 Gene3D G3DSA:3.40.30.10 Glutaredoxin 111 191 1.8E-25
5 g4631.t6 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 10 48 5.0E-60
4 g4631.t6 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 48 111 5.0E-60
3 g4631.t6 PANTHER PTHR45815 PROTEIN DISULFIDE-ISOMERASE A6 123 191 5.0E-60
1 g4631.t6 Pfam PF00085 Thioredoxin 48 96 3.2E-8
2 g4631.t6 Pfam PF00085 Thioredoxin 127 190 8.9E-19
12 g4631.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
13 g4631.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
14 g4631.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 14 -
15 g4631.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
11 g4631.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 191 -
17 g4631.t6 ProSiteProfiles PS51352 Thioredoxin domain profile. 95 191 9.166
7 g4631.t6 SUPERFAMILY SSF52833 Thioredoxin-like 19 96 6.75E-16
6 g4631.t6 SUPERFAMILY SSF52833 Thioredoxin-like 123 191 2.32E-22
8 g4631.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -
16 g4631.t6 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed