General information for g4658.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase .
Parent gene
- The parent gene g4658 is located on chr_2: 3971956..3972908 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4658 | g4658.t2 | TTS | g4658.t2 | 3970777 | 3970777 |
| chr_2 | g4658 | g4658.t2 | isoform | g4658.t2 | 3970819 | 3972583 |
| chr_2 | g4658 | g4658.t2 | exon | g4658.t2.exon1 | 3970819 | 3971532 |
| chr_2 | g4658 | g4658.t2 | cds | g4658.t2.CDS1 | 3970819 | 3971532 |
| chr_2 | g4658 | g4658.t2 | exon | g4658.t2.exon2 | 3971588 | 3971964 |
| chr_2 | g4658 | g4658.t2 | cds | g4658.t2.CDS2 | 3971588 | 3971964 |
| chr_2 | g4658 | g4658.t2 | exon | g4658.t2.exon3 | 3972052 | 3972583 |
| chr_2 | g4658 | g4658.t2 | cds | g4658.t2.CDS3 | 3972052 | 3972091 |
| chr_2 | g4658 | g4658.t2 | TSS | g4658.t2 | 3972909 | 3972909 |
Sequences
>g4658.t2 Gene=g4658 Length=1623
ATGTTACCAATAAAATTTATTGCCATATCACTCATGATGATGTCATCAGTCATAACAGCA
TTTGATATTTTGATTCTCGCACCTTTTCCATATCATTCAAATTGGCTTTATATGGAAAAT
TTTATTGAAGCTTTACTAAAACGTGGACATTATTTGACTACAATTTCACCATTTTTATAC
AAAAGAAATCCTGATGTTGAAAATTTAAAACAAATTATTATTTCAAGATATCCAATTGAA
AAAGAATGTGAGTTAAAAATTCAAATTTTTTGAACATTTATGAGAATTTAATTTAAATTT
TTAGACTCTTCAAAAGATGTTTTTACTGGTGGATTTGATAGTGACATAAAATACATTCAA
ACTCAATATAAAATTGGTCTACATTTGTCAGAACATGCTTTAAATGATTCTGCAGTAAAA
AAATTCATAAAGAAAAGAGAAAATAAATTTGATGTCATTTTAGCCGATAATTCTCATCAA
GAATCGCTTTTTATGTTTGCTCATAAATTTAATTGTCCTTTGATTACTGTTGATATCAAC
AGTCATTCAAGTAACATGGATGAAGTAATGGGAATTTTGACTCAACCTTCATTTGTTCCA
CATCCAGCAACAAAATATGGCAAAGAAATGACATTCATCCAAAGAAGCTACAACACTTTG
CTCTATTTTTATGAAACTGCTGTCAGAAGATTTTCATACATGCCTGCACAAAATAAATTG
GCTAGAAAATACTTTAAAGATGCTTTTGATGGTGAAATTCCTGATTTATCTGTAGTTCAG
AAGAGAATTTCAGTGATACTTTCAAATACTCATCGTTTAACTAACACAAGACCTAAAATG
GCAGCACAAGTTGATATTGCTGGAGCTCATTTGAAAGAAAAGTATGATGCTTTGCCTGCT
TATCTTCATAATGCAATTGAAAATTCCAAGCATAGCATTGTTTTTTTCTCCTTTGGTTCT
TATATAAATTCAGGAGAAATGCCAAAAGAAAAAATCAATCAAATTTTGGAAGCTTTTAGA
AACACAAAGAAAACAATTTTTTGGAAATTTGATGGTGATATTCCTGAAGGTGTTCCAGAA
AATGTAATTATTCAAAATTGGTTTCCACAGAATGAACTGCTATCAAATCCGGTTGTGACA
CTTTTTATAACAAGCGGAAGTTCTTTGAGCTTTCAAGAAGCAATTTATCATAGAATTCCA
ATGTTGATTATTCCATTGACAGGAGAGCAATATAGAAACGGTCTTGAAGCTGAGAAAAAT
GGTTATGGAAAGATTTTAATGTTTGATGACATAAATGAGAAAACTTTGGCAGAAGCAATT
GTTGAAATTACAACAGATAAATCTTATTTTTCAAATGTCAATACAGCATATTCAAAATTT
ACAGACAATCCCATTGAGCCTATGAAAGAAGCTATTTATTGGATTCAGCATGTTGCAAAG
TTTGGCGGTCTTGAAAAATCACCATCAGTAAATTACTCTTGGTTCACTTACTATAATCTT
GATGTTGCAGCTTTTTATTTCTTAATCTTTATTATTGTTGTAATTTTCTGGATTGTTACA
ATCAAACTTATTCTTAATCGCTATCGCAAAAGAGAAGAGAGAGGCAAATTTAAATATTAT
TGA
>g4658.t2 Gene=g4658 Length=376
MFAHKFNCPLITVDINSHSSNMDEVMGILTQPSFVPHPATKYGKEMTFIQRSYNTLLYFY
ETAVRRFSYMPAQNKLARKYFKDAFDGEIPDLSVVQKRISVILSNTHRLTNTRPKMAAQV
DIAGAHLKEKYDALPAYLHNAIENSKHSIVFFSFGSYINSGEMPKEKINQILEAFRNTKK
TIFWKFDGDIPEGVPENVIIQNWFPQNELLSNPVVTLFITSGSSLSFQEAIYHRIPMLII
PLTGEQYRNGLEAEKNGYGKILMFDDINEKTLAEAIVEITTDKSYFSNVNTAYSKFTDNP
IEPMKEAIYWIQHVAKFGGLEKSPSVNYSWFTYYNLDVAAFYFLIFIIVVIFWIVTIKLI
LNRYRKREERGKFKYY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g4658.t2 | CDD | cd03784 | GT1_Gtf-like | 33 | 285 | 1.12107E-35 |
| 6 | g4658.t2 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 130 | 295 | 1.6E-36 |
| 2 | g4658.t2 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 1 | 356 | 1.3E-106 |
| 3 | g4658.t2 | PANTHER | PTHR48043:SF59 | UDP-GLUCURONOSYLTRANSFERASE | 1 | 356 | 1.3E-106 |
| 1 | g4658.t2 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 3 | 366 | 8.9E-57 |
| 8 | g4658.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 338 | - |
| 9 | g4658.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 339 | 361 | - |
| 7 | g4658.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 362 | 376 | - |
| 5 | g4658.t2 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 2 | 319 | 2.13E-60 |
| 4 | g4658.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 339 | 361 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed