General information for g4658.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 1-6.
Parent gene
- The parent gene g4658 is located on chr_2: 3971956..3972908 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4658 | g4658.t4 | TTS | g4658.t4 | 3970777 | 3970777 |
| chr_2 | g4658 | g4658.t4 | isoform | g4658.t4 | 3970819 | 3972908 |
| chr_2 | g4658 | g4658.t4 | exon | g4658.t4.exon1 | 3970819 | 3971532 |
| chr_2 | g4658 | g4658.t4 | cds | g4658.t4.CDS1 | 3970819 | 3971532 |
| chr_2 | g4658 | g4658.t4 | exon | g4658.t4.exon2 | 3971588 | 3971964 |
| chr_2 | g4658 | g4658.t4 | cds | g4658.t4.CDS2 | 3971588 | 3971964 |
| chr_2 | g4658 | g4658.t4 | exon | g4658.t4.exon3 | 3972052 | 3972279 |
| chr_2 | g4658 | g4658.t4 | cds | g4658.t4.CDS3 | 3972052 | 3972279 |
| chr_2 | g4658 | g4658.t4 | exon | g4658.t4.exon4 | 3972337 | 3972590 |
| chr_2 | g4658 | g4658.t4 | cds | g4658.t4.CDS4 | 3972337 | 3972583 |
| chr_2 | g4658 | g4658.t4 | exon | g4658.t4.exon5 | 3972848 | 3972908 |
| chr_2 | g4658 | g4658.t4 | TSS | g4658.t4 | 3972909 | 3972909 |
Sequences
>g4658.t4 Gene=g4658 Length=1634
GTCTTATACGAACATTGGAAGTGAATATTTTGAGTTAAATTTTATTAAATTAAAAGAAAT
TCATAAAAATGTTACCAATAAAATTTATTGCCATATCACTCATGATGATGTCATCAGTCA
TAACAGCATTTGATATTTTGATTCTCGCACCTTTTCCATATCATTCAAATTGGCTTTATA
TGGAAAATTTTATTGAAGCTTTACTAAAACGTGGACATTATTTGACTACAATTTCACCAT
TTTTATACAAAAGAAATCCTGATGTTGAAAATTTAAAACAAATTATTATTTCAAGATATC
CAATTGAAAAAGAATACTCTTCAAAAGATGTTTTTACTGGTGGATTTGATAGTGACATAA
AATACATTCAAACTCAATATAAAATTGGTCTACATTTGTCAGAACATGCTTTAAATGATT
CTGCAGTAAAAAAATTCATAAAGAAAAGAGAAAATAAATTTGATGTCATTTTAGCCGATA
ATTCTCATCAAGAATCGCTTTTTATGTTTGCTCATAAATTTAATTGTCCTTTGATTACTG
TTGATATCAACAGTCATTCAAGTAACATGGATGAAGTAATGGGAATTTTGACTCAACCTT
CATTTGTTCCACATCCAGCAACAAAATATGGCAAAGAAATGACATTCATCCAAAGAAGCT
ACAACACTTTGCTCTATTTTTATGAAACTGCTGTCAGAAGATTTTCATACATGCCTGCAC
AAAATAAATTGGCTAGAAAATACTTTAAAGATGCTTTTGATGGTGAAATTCCTGATTTAT
CTGTAGTTCAGAAGAGAATTTCAGTGATACTTTCAAATACTCATCGTTTAACTAACACAA
GACCTAAAATGGCAGCACAAGTTGATATTGCTGGAGCTCATTTGAAAGAAAAGTATGATG
CTTTGCCTGCTTATCTTCATAATGCAATTGAAAATTCCAAGCATAGCATTGTTTTTTTCT
CCTTTGGTTCTTATATAAATTCAGGAGAAATGCCAAAAGAAAAAATCAATCAAATTTTGG
AAGCTTTTAGAAACACAAAGAAAACAATTTTTTGGAAATTTGATGGTGATATTCCTGAAG
GTGTTCCAGAAAATGTAATTATTCAAAATTGGTTTCCACAGAATGAACTGCTATCAAATC
CGGTTGTGACACTTTTTATAACAAGCGGAAGTTCTTTGAGCTTTCAAGAAGCAATTTATC
ATAGAATTCCAATGTTGATTATTCCATTGACAGGAGAGCAATATAGAAACGGTCTTGAAG
CTGAGAAAAATGGTTATGGAAAGATTTTAATGTTTGATGACATAAATGAGAAAACTTTGG
CAGAAGCAATTGTTGAAATTACAACAGATAAATCTTATTTTTCAAATGTCAATACAGCAT
ATTCAAAATTTACAGACAATCCCATTGAGCCTATGAAAGAAGCTATTTATTGGATTCAGC
ATGTTGCAAAGTTTGGCGGTCTTGAAAAATCACCATCAGTAAATTACTCTTGGTTCACTT
ACTATAATCTTGATGTTGCAGCTTTTTATTTCTTAATCTTTATTATTGTTGTAATTTTCT
GGATTGTTACAATCAAACTTATTCTTAATCGCTATCGCAAAAGAGAAGAGAGAGGCAAAT
TTAAATATTATTGA
>g4658.t4 Gene=g4658 Length=521
MLPIKFIAISLMMMSSVITAFDILILAPFPYHSNWLYMENFIEALLKRGHYLTTISPFLY
KRNPDVENLKQIIISRYPIEKEYSSKDVFTGGFDSDIKYIQTQYKIGLHLSEHALNDSAV
KKFIKKRENKFDVILADNSHQESLFMFAHKFNCPLITVDINSHSSNMDEVMGILTQPSFV
PHPATKYGKEMTFIQRSYNTLLYFYETAVRRFSYMPAQNKLARKYFKDAFDGEIPDLSVV
QKRISVILSNTHRLTNTRPKMAAQVDIAGAHLKEKYDALPAYLHNAIENSKHSIVFFSFG
SYINSGEMPKEKINQILEAFRNTKKTIFWKFDGDIPEGVPENVIIQNWFPQNELLSNPVV
TLFITSGSSLSFQEAIYHRIPMLIIPLTGEQYRNGLEAEKNGYGKILMFDDINEKTLAEA
IVEITTDKSYFSNVNTAYSKFTDNPIEPMKEAIYWIQHVAKFGGLEKSPSVNYSWFTYYN
LDVAAFYFLIFIIVVIFWIVTIKLILNRYRKREERGKFKYY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g4658.t4 | CDD | cd03784 | GT1_Gtf-like | 23 | 430 | 1.08384E-41 |
| 7 | g4658.t4 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 275 | 440 | 3.2E-36 |
| 2 | g4658.t4 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 15 | 501 | 3.5E-136 |
| 3 | g4658.t4 | PANTHER | PTHR48043:SF59 | UDP-GLUCURONOSYLTRANSFERASE | 15 | 501 | 3.5E-136 |
| 1 | g4658.t4 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 32 | 511 | 1.4E-61 |
| 8 | g4658.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 12 | g4658.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 31 | - |
| 10 | g4658.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 483 | - |
| 11 | g4658.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 484 | 506 | - |
| 9 | g4658.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 507 | 521 | - |
| 6 | g4658.t4 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 23 | 464 | 5.14E-74 |
| 4 | g4658.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 5 | g4658.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 484 | 506 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
