General information for g4668.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trypsin-2.
Parent gene
- The parent gene g4668 is located on chr_2: 4038093..4038974 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4668 | g4668.t1 | TTS | g4668.t1 | 4037979 | 4037979 |
| chr_2 | g4668 | g4668.t1 | isoform | g4668.t1 | 4038093 | 4038974 |
| chr_2 | g4668 | g4668.t1 | exon | g4668.t1.exon1 | 4038093 | 4038229 |
| chr_2 | g4668 | g4668.t1 | cds | g4668.t1.CDS1 | 4038093 | 4038229 |
| chr_2 | g4668 | g4668.t1 | exon | g4668.t1.exon2 | 4038294 | 4038307 |
| chr_2 | g4668 | g4668.t1 | cds | g4668.t1.CDS2 | 4038294 | 4038307 |
| chr_2 | g4668 | g4668.t1 | exon | g4668.t1.exon3 | 4038370 | 4038974 |
| chr_2 | g4668 | g4668.t1 | cds | g4668.t1.CDS3 | 4038370 | 4038974 |
| chr_2 | g4668 | g4668.t1 | TSS | g4668.t1 | 4040003 | 4040003 |
Sequences
>g4668.t1 Gene=g4668 Length=756
ATGAAACTTCCAGTAATATTTTTATTAATCAACTTTCTTAGAGTGATCAATTGTGAAACA
AACATCGATGATCAGAAAATTGTAGGAGGATTTCAAATTAGTATTTTAGATGCATCTTAT
CAAGGTGCATTGCTTTATCGAAATAGTTTCATTTGTGGATGCTCGATTATTTCACCAAAA
TATCTTTTAACTGCTGCTCATTGTGTTCATGAATATCGAAATAGTTTGACTATTAGAGTT
GGCTCTTCACATGCATATCATGGAGGAGAGGTTTATCAAGTTGAAAAAGTAATCAAACAT
CCATTATTTTCGATAACCACTCTAAATAATGATTTTGCTCTTCTTAAATTGAAAAACAAC
ATCACATTGATTAATGGTGAAAAAGAAATTATTAAATTGCCAAGAGCCAATGAAAATATT
GAAGAAGGTACTGAAGTTTTTGTAAGTGGCTTTGGCTCAACAAATGATCTGACGACGAAT
GATCATACTCTTCGTGGTGTAATAGTTCCAATTGTCTCACAAAGTGAATGCAAAAGAGCT
TATCCCAAAATGATTACGAATAGAATGATCTGTGCAGGCTTTGAAGAAGGCAAAAAAGAT
GCATGTTCGGGTGATTCAGGTGGACCTATGGTTCGCGATCGAACATTAGTAGGAGTTGTA
TCATTTGGGATTGGTTGCGCTCTTCCAAAAATGTATGGTGTTTATGGCAAAGTTTCTACA
GTAAGAAATTGGATAAAAGCTGAAACAATCATTTAA
>g4668.t1 Gene=g4668 Length=251
MKLPVIFLLINFLRVINCETNIDDQKIVGGFQISILDASYQGALLYRNSFICGCSIISPK
YLLTAAHCVHEYRNSLTIRVGSSHAYHGGEVYQVEKVIKHPLFSITTLNNDFALLKLKNN
ITLINGEKEIIKLPRANENIEEGTEVFVSGFGSTNDLTTNDHTLRGVIVPIVSQSECKRA
YPKMITNRMICAGFEEGKKDACSGDSGGPMVRDRTLVGVVSFGIGCALPKMYGVYGKVST
VRNWIKAETII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g4668.t1 | CDD | cd00190 | Tryp_SPc | 27 | 246 | 8.36515E-86 |
| 9 | g4668.t1 | Gene3D | G3DSA:2.40.10.10 | - | 18 | 250 | 2.1E-63 |
| 2 | g4668.t1 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 23 | 249 | 4.0E-80 |
| 3 | g4668.t1 | PANTHER | PTHR24276:SF83 | GH13245P2-RELATED | 23 | 249 | 4.0E-80 |
| 6 | g4668.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 53 | 68 | 2.0E-14 |
| 4 | g4668.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 107 | 121 | 2.0E-14 |
| 5 | g4668.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 199 | 211 | 2.0E-14 |
| 1 | g4668.t1 | Pfam | PF00089 | Trypsin | 27 | 245 | 2.4E-60 |
| 11 | g4668.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 12 | g4668.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 13 | g4668.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 14 | g4668.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 10 | g4668.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 251 | - |
| 17 | g4668.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 63 | 68 | - |
| 18 | g4668.t1 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 200 | 211 | - |
| 19 | g4668.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 27 | 250 | 29.712 |
| 16 | g4668.t1 | SMART | SM00020 | trypsin_2 | 26 | 245 | 1.4E-72 |
| 7 | g4668.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 9 | 247 | 5.85E-70 |
| 8 | g4668.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
- This transcript has been annotated with K01312 (trypsin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed