General information for g469.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g469 is located on chr_3: 3557937..3558972 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g469 | g469.t2 | isoform | g469.t2 | 3557855 | 3558757 |
| chr_3 | g469 | g469.t2 | exon | g469.t2.exon1 | 3557855 | 3558757 |
| chr_3 | g469 | g469.t2 | TTS | g469.t2 | 3557861 | 3557861 |
| chr_3 | g469 | g469.t2 | cds | g469.t2.CDS1 | 3557937 | 3558173 |
| chr_3 | g469 | g469.t2 | TSS | g469.t2 | 3559061 | 3559061 |
Sequences
>g469.t2 Gene=g469 Length=903
ATTTTATAAACAGACTTCCAGATAAAGGTGAAAAAATAAAGAATTTGTATGATCGGATTG
TTGAAGCTTTAGAATACAGAACTGACATTGAAAATGCTTCAAAATTACTGTCGAAACTCA
ATATAGGCTCAAATAATCTTAACAATCTTGAATGGGAAGGATCAATTCAAATAAAAAAGC
CACAGACTCTCGATAGCGACGATGAGGAACAAAACCCATTAGAAATTCTCGCCTCATCTA
ATAGCACTTTTAAAAATCAAAAAATTGTCAAGAAAAGTAATGATCCAAATGAGAAACCAC
TAATAACAGAAGAAGATCTTAAAGAAGCTAATGAGATAATCAATGGTGAACTTCATTTAA
ATCCAGTTGATGAAAAAATTTGTGAAAGAGAGAAACTGGAATTAGAATATAGATTTCTTC
CTTATAAGAGTACTGAATTTAAAAAGAAGAAAGAAGAGGACGATAAAAAGAAGGAACCAA
AAAAACGTGAAGTTACAGCAGCAACACCGCCAGTAATTTTGAAAGGAACAGTACCTTTGA
CATTAAAAGAGTCTCTTGATATTGAACTGCATCATCAGACAGTAATGAAACAATTATTAG
AAAAACAAGCCGTTGAACGACTTGAGGCAAAGATGAAAGAACTTAAAGCTGCTGGTTTAG
AAATTTCTTCATCACCAGAAATTGTGCCACGATCAAAAGTTTTAAGCATGAAAAAATATC
GTTTACCTGATCCAATTATCGATGAATGTGATCTTGTTGAAGATGAAGACGAAGATAAAA
GTGATGATAGTCTTACAGATGAAGAAAATGAAGAGTACTAAATAATTTAGTCTAAATTTC
TTTTCTAACAGTCATATTTTATTTTAACATCAATAAATACTGTGTATTACAATACTGAAA
ATT
>g469.t2 Gene=g469 Length=78
MKQLLEKQAVERLEAKMKELKAAGLEISSSPEIVPRSKVLSMKKYRLPDPIIDECDLVED
EDEDKSDDSLTDEENEEY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g469.t2 | Coils | Coil | Coil | 3 | 23 | - |
| 1 | g469.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 78 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
