General information for g4691.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 23.
Parent gene
- The parent gene g4691 is located on chr_2: 4225500..4228372 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4691 | g4691.t3 | isoform | g4691.t3 | 4224028 | 4226998 |
| chr_2 | g4691 | g4691.t3 | TSS | g4691.t3 | 4224028 | 4224028 |
| chr_2 | g4691 | g4691.t3 | exon | g4691.t3.exon1 | 4224028 | 4224181 |
| chr_2 | g4691 | g4691.t3 | exon | g4691.t3.exon2 | 4225496 | 4225603 |
| chr_2 | g4691 | g4691.t3 | cds | g4691.t3.CDS1 | 4225497 | 4225603 |
| chr_2 | g4691 | g4691.t3 | exon | g4691.t3.exon3 | 4225669 | 4225691 |
| chr_2 | g4691 | g4691.t3 | cds | g4691.t3.CDS2 | 4225669 | 4225691 |
| chr_2 | g4691 | g4691.t3 | exon | g4691.t3.exon4 | 4225747 | 4226587 |
| chr_2 | g4691 | g4691.t3 | cds | g4691.t3.CDS3 | 4225747 | 4226587 |
| chr_2 | g4691 | g4691.t3 | exon | g4691.t3.exon5 | 4226902 | 4226998 |
| chr_2 | g4691 | g4691.t3 | cds | g4691.t3.CDS4 | 4226902 | 4226998 |
| chr_2 | g4691 | g4691.t3 | TTS | g4691.t3 | NA | NA |
Sequences
>g4691.t3 Gene=g4691 Length=1223
TAGTTTGTTGCGCGATTCACAAGAGAAGAGTCATAAAACACAATATTCCATATATCGAAG
CACTTGACATAAATGTGAAATCTCTATTTTATATTTCGGTGTATTTTGATTATAAATGTG
AAAGCAGCAGACAGTGAAATCAGAAAAATTATTTAATGATGAATACTGTCGAGGTGCGAA
ATGCTGTCAAATATTATGGATCAGGCAACGATCCATTTATGATTCTTAATAAGCTCAATA
TGACTGTTCCACCTGGGTCAATATATGCTCTATTAGGTGCTTCAGGATGTGGCAAAACAA
CTTTGCTCTCATGCATTCTTGGAATGATTCCATTGGATGATGGAGAAATTTCAGTATTTG
GTAATGTTACAACAAAATATGCCACAAAAGTGAATGGTTCGAGAATTGGTTATATGCCAC
AGGAAATGGCATTAGTTGGTGAGCTAACTGTCAAAGAAACAATTTATTATTTTGGTAAAA
TATTTTTAATGGACATTGATAAGTTAAGAGATCGTTATGACATGCTACATAAATTACTTG
AGCTGCCAAGAGGAGATCAACGAATTGAAACATGTTCTGGTGGACAGAAAAGACGAGTTT
CATTTGCAGCTGCCATGATCCATGAGCCAGATTTATTAATTCTTGATGAGCCGACAGTTG
GCCTCGATCCATTGCTCAGAGAAAAAATTTGGAGTTTTATGCTTGATGTTACAAGCACAA
GTAAACTTTCCATAATTATTACAACACATTACATTGAAGAAGCACGACAAGCAAAATGTG
TTGGTTTAATGCGAAATGGTGTTCTGCTGGCAGAAGATAAACCTATGAATATCGTAAATC
AAAATAATGTTGAGAATCTTGAAGAAGCATTTCTTGCTTTATGCTTAAAACGTGGTGTTT
CTGAGTATGCTGGAGCACTCACATATATTGAAACAAATGGCACGAACAACAATATTTATA
ATACAAACAATCTTGAAATGAATGCAAATCGAAAACACACATCAAAATACAAGAACAAAA
ATGTGTTTGCAAGTGTTTCAACCGAAAGCAGAAGCAACAACTTACGATGGCCAATCGTCA
AAACACTGTTTATAAAAGTTTGGACACAGTTGAAACGACAACCAGCTGCTCTCGTGTTAA
TTACATTCTTACCGATCATTCAACTCTTTTTCTTTTATCATGCATGTGGTGGCAATCCAA
AAGGACTACAATTAGCTATAGTT
>g4691.t3 Gene=g4691 Length=356
MMNTVEVRNAVKYYGSGNDPFMILNKLNMTVPPGSIYALLGASGCGKTTLLSCILGMIPL
DDGEISVFGNVTTKYATKVNGSRIGYMPQEMALVGELTVKETIYYFGKIFLMDIDKLRDR
YDMLHKLLELPRGDQRIETCSGGQKRRVSFAAAMIHEPDLLILDEPTVGLDPLLREKIWS
FMLDVTSTSKLSIIITTHYIEEARQAKCVGLMRNGVLLAEDKPMNIVNQNNVENLEEAFL
ALCLKRGVSEYAGALTYIETNGTNNNIYNTNNLEMNANRKHTSKYKNKNVFASVSTESRS
NNLRWPIVKTLFIKVWTQLKRQPAALVLITFLPIIQLFFFYHACGGNPKGLQLAIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g4691.t3 | CDD | cd03230 | ABC_DR_subfamily_A | 5 | 217 | 1.98128E-59 |
| 5 | g4691.t3 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 294 | 4.3E-57 |
| 2 | g4691.t3 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 2 | 356 | 9.4E-129 |
| 3 | g4691.t3 | PANTHER | PTHR43038:SF2 | RH61964P | 2 | 356 | 9.4E-129 |
| 1 | g4691.t3 | Pfam | PF00005 | ABC transporter | 24 | 167 | 6.8E-29 |
| 6 | g4691.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 323 | - |
| 8 | g4691.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 343 | - |
| 7 | g4691.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 344 | 356 | - |
| 11 | g4691.t3 | ProSitePatterns | PS00211 | ABC transporters family signature. | 140 | 154 | - |
| 13 | g4691.t3 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 5 | 239 | 19.521 |
| 12 | g4691.t3 | SMART | SM00382 | AAA_5 | 33 | 223 | 2.3E-11 |
| 4 | g4691.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 5 | 231 | 1.28E-53 |
| 10 | g4691.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 343 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed