General information for g4691.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 23.
Parent gene
- The parent gene g4691 is located on chr_2: 4225500..4228372 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4691 | g4691.t4 | isoform | g4691.t4 | 4224028 | 4227932 |
| chr_2 | g4691 | g4691.t4 | TSS | g4691.t4 | 4224028 | 4224028 |
| chr_2 | g4691 | g4691.t4 | exon | g4691.t4.exon1 | 4224028 | 4224181 |
| chr_2 | g4691 | g4691.t4 | exon | g4691.t4.exon2 | 4225496 | 4225625 |
| chr_2 | g4691 | g4691.t4 | exon | g4691.t4.exon3 | 4225747 | 4226587 |
| chr_2 | g4691 | g4691.t4 | cds | g4691.t4.CDS1 | 4225785 | 4226587 |
| chr_2 | g4691 | g4691.t4 | exon | g4691.t4.exon4 | 4226902 | 4226998 |
| chr_2 | g4691 | g4691.t4 | cds | g4691.t4.CDS2 | 4226902 | 4226998 |
| chr_2 | g4691 | g4691.t4 | exon | g4691.t4.exon5 | 4227056 | 4227932 |
| chr_2 | g4691 | g4691.t4 | cds | g4691.t4.CDS3 | 4227056 | 4227931 |
| chr_2 | g4691 | g4691.t4 | TTS | g4691.t4 | 4228459 | 4228459 |
Sequences
>g4691.t4 Gene=g4691 Length=2099
TAGTTTGTTGCGCGATTCACAAGAGAAGAGTCATAAAACACAATATTCCATATATCGAAG
CACTTGACATAAATGTGAAATCTCTATTTTATATTTCGGTGTATTTTGATTATAAATGTG
AAAGCAGCAGACAGTGAAATCAGAAAAATTATTTAATGATGAATACTGTCGAGGTGCGAA
ATGCTGTCAAATATTATGGATCAGGCAACGATCCATTTATGATTCTTAATAAGCTCAATA
TGACTGTTCCACCTGGGTCAATGTAAGTTTATGAAAATTCTTAGGATGTGGCAAAACAAC
TTTGCTCTCATGCATTCTTGGAATGATTCCATTGGATGATGGAGAAATTTCAGTATTTGG
TAATGTTACAACAAAATATGCCACAAAAGTGAATGGTTCGAGAATTGGTTATATGCCACA
GGAAATGGCATTAGTTGGTGAGCTAACTGTCAAAGAAACAATTTATTATTTTGGTAAAAT
ATTTTTAATGGACATTGATAAGTTAAGAGATCGTTATGACATGCTACATAAATTACTTGA
GCTGCCAAGAGGAGATCAACGAATTGAAACATGTTCTGGTGGACAGAAAAGACGAGTTTC
ATTTGCAGCTGCCATGATCCATGAGCCAGATTTATTAATTCTTGATGAGCCGACAGTTGG
CCTCGATCCATTGCTCAGAGAAAAAATTTGGAGTTTTATGCTTGATGTTACAAGCACAAG
TAAACTTTCCATAATTATTACAACACATTACATTGAAGAAGCACGACAAGCAAAATGTGT
TGGTTTAATGCGAAATGGTGTTCTGCTGGCAGAAGATAAACCTATGAATATCGTAAATCA
AAATAATGTTGAGAATCTTGAAGAAGCATTTCTTGCTTTATGCTTAAAACGTGGTGTTTC
TGAGTATGCTGGAGCACTCACATATATTGAAACAAATGGCACGAACAACAATATTTATAA
TACAAACAATCTTGAAATGAATGCAAATCGAAAACACACATCAAAATACAAGAACAAAAA
TGTGTTTGCAAGTGTTTCAACCGAAAGCAGAAGCAACAACTTACGATGGCCAATCGTCAA
AACACTGTTTATAAAAGTTTGGACACAGTTGAAACGACAACCAGCTGCTCTCGTGTTAAT
TACATTCTTACCGATCATTCAACTCTTTTTCTTTTATCATGCATGTGGTGGCAATCCAAA
AGGACTACAATTAGCTATAGTTAATAATGAAATTGATGATTATGAAACAACATGTAATCG
AAGCACATTAATTAGTACATATCCTCATGATTATACGTGTGATTTGCATCTCATATCATG
CAGATTCCTCGATGAACTCACAGATGAAACAGCAATAAAAGTTTTTTTCTCTTCATTTGA
TGAAGCATGGAAAGCAGCAAAACGTGGAGAATATATTGGTATAATTGAAATATCGAGAAA
TTTTACAGAGGCACTAGAAATTGTTAGAAAAAGACCTGAAGAAGCAACTGAAGGGATAAT
ACAAAGCAGCAAGATCAAAGTGTATCTAGATCAAGCTGATTTACAATTAACTTTTTTCCT
TCAAAGGAAAATTTATGAAGTTTATACAAATTATACTCAGAATGTTCTCAGAGATTGTAA
AATGCCCATAAAATTGGACAACATTCCAATGGATTTTTCAGAATCACTTTTTGGTTCAAT
CGATTCTGATTTTAAACATACAATGATGCCGGCATTCACAATGTTAGTTGTATTTGTACT
TTCATCTGGTCTGACACTTAGTGGGATCATTTTAGAACGAAAAGAAGGCTTTTGGAACAG
AACATTGCTTGCTGGAGTTTCAACAATCGAAATCTTATCAGCTTACATCATAATCAATTT
CATAATTGTCATTATGCAGTTATTTGAAGTTCTTTTCCTATTAACATTCATTTATGGAAC
ATATTACCATGGATCTTATATGATTGTTATGATGATGCTCGCTATTTTGGGATGTAGTGG
TATTAATTTTGGATTATGGATTTCATGTCTTTGTTCTGAACTAATGCAAGCTAATTTATT
AATGTCTGGGATTACTCAGCCATTGACCGTGCTAAGTGGAATGATTTGGCCGGTTGAAG
>g4691.t4 Gene=g4691 Length=592
MIPLDDGEISVFGNVTTKYATKVNGSRIGYMPQEMALVGELTVKETIYYFGKIFLMDIDK
LRDRYDMLHKLLELPRGDQRIETCSGGQKRRVSFAAAMIHEPDLLILDEPTVGLDPLLRE
KIWSFMLDVTSTSKLSIIITTHYIEEARQAKCVGLMRNGVLLAEDKPMNIVNQNNVENLE
EAFLALCLKRGVSEYAGALTYIETNGTNNNIYNTNNLEMNANRKHTSKYKNKNVFASVST
ESRSNNLRWPIVKTLFIKVWTQLKRQPAALVLITFLPIIQLFFFYHACGGNPKGLQLAIV
NNEIDDYETTCNRSTLISTYPHDYTCDLHLISCRFLDELTDETAIKVFFSSFDEAWKAAK
RGEYIGIIEISRNFTEALEIVRKRPEEATEGIIQSSKIKVYLDQADLQLTFFLQRKIYEV
YTNYTQNVLRDCKMPIKLDNIPMDFSESLFGSIDSDFKHTMMPAFTMLVVFVLSSGLTLS
GIILERKEGFWNRTLLAGVSTIEILSAYIIINFIIVIMQLFEVLFLLTFIYGTYYHGSYM
IVMMMLAILGCSGINFGLWISCLCSELMQANLLMSGITQPLTVLSGMIWPVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g4691.t4 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 192 | 1.0E-35 |
| 3 | g4691.t4 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 4 | 592 | 5.1E-185 |
| 4 | g4691.t4 | PANTHER | PTHR43038:SF2 | RH61964P | 4 | 592 | 5.1E-185 |
| 2 | g4691.t4 | Pfam | PF00005 | ABC transporter | 5 | 111 | 2.6E-13 |
| 1 | g4691.t4 | Pfam | PF12698 | ABC-2 family transporter protein | 270 | 592 | 1.3E-19 |
| 11 | g4691.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 267 | - |
| 19 | g4691.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 268 | 287 | - |
| 16 | g4691.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 288 | 460 | - |
| 21 | g4691.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 461 | 484 | - |
| 13 | g4691.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 485 | 504 | - |
| 18 | g4691.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 505 | 531 | - |
| 15 | g4691.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 532 | 536 | - |
| 17 | g4691.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 537 | 560 | - |
| 12 | g4691.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 561 | 571 | - |
| 20 | g4691.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 572 | 591 | - |
| 14 | g4691.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 592 | 592 | - |
| 9 | g4691.t4 | ProSitePatterns | PS00211 | ABC transporters family signature. | 84 | 98 | - |
| 8 | g4691.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 175 | 7.75E-33 |
| 5 | g4691.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 462 | 484 | - |
| 7 | g4691.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 504 | 526 | - |
| 6 | g4691.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 541 | 563 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed