Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ABC transporter G family member 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4691 g4691.t5 TSS g4691.t5 4224028 4224028
chr_2 g4691 g4691.t5 isoform g4691.t5 4224156 4226320
chr_2 g4691 g4691.t5 exon g4691.t5.exon1 4224156 4224181
chr_2 g4691 g4691.t5 exon g4691.t5.exon2 4225496 4225603
chr_2 g4691 g4691.t5 cds g4691.t5.CDS1 4225497 4225603
chr_2 g4691 g4691.t5 exon g4691.t5.exon3 4225669 4225691
chr_2 g4691 g4691.t5 cds g4691.t5.CDS2 4225669 4225691
chr_2 g4691 g4691.t5 exon g4691.t5.exon4 4225747 4226320
chr_2 g4691 g4691.t5 cds g4691.t5.CDS3 4225747 4226318
chr_2 g4691 g4691.t5 TTS g4691.t5 NA NA

Sequences

>g4691.t5 Gene=g4691 Length=731
AGACAGTGAAATCAGAAAAATTATTTAATGATGAATACTGTCGAGGTGCGAAATGCTGTC
AAATATTATGGATCAGGCAACGATCCATTTATGATTCTTAATAAGCTCAATATGACTGTT
CCACCTGGGTCAATATATGCTCTATTAGGTGCTTCAGGATGTGGCAAAACAACTTTGCTC
TCATGCATTCTTGGAATGATTCCATTGGATGATGGAGAAATTTCAGTATTTGGTAATGTT
ACAACAAAATATGCCACAAAAGTGAATGGTTCGAGAATTGGTTATATGCCACAGGAAATG
GCATTAGTTGGTGAGCTAACTGTCAAAGAAACAATTTATTATTTTGGTAAAATATTTTTA
ATGGACATTGATAAGTTAAGAGATCGTTATGACATGCTACATAAATTACTTGAGCTGCCA
AGAGGAGATCAACGAATTGAAACATGTTCTGGTGGACAGAAAAGACGAGTTTCATTTGCA
GCTGCCATGATCCATGAGCCAGATTTATTAATTCTTGATGAGCCGACAGTTGGCCTCGAT
CCATTGCTCAGAGAAAAAATTTGGAGTTTTATGCTTGATGTTACAAGCACAAGTAAACTT
TCCATAATTATTACAACACATTACATTGAAGAAGCACGACAAGCAAAATGTGTTGGTTTA
ATGCGAAATGGTGTTCTGCTGGCAGAAGATAAACCTATGAATATCGTAAATCAAAATAAT
GTTGAGAATCT

>g4691.t5 Gene=g4691 Length=234
MMNTVEVRNAVKYYGSGNDPFMILNKLNMTVPPGSIYALLGASGCGKTTLLSCILGMIPL
DDGEISVFGNVTTKYATKVNGSRIGYMPQEMALVGELTVKETIYYFGKIFLMDIDKLRDR
YDMLHKLLELPRGDQRIETCSGGQKRRVSFAAAMIHEPDLLILDEPTVGLDPLLREKIWS
FMLDVTSTSKLSIIITTHYIEEARQAKCVGLMRNGVLLAEDKPMNIVNQNNVEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g4691.t5 CDD cd03230 ABC_DR_subfamily_A 5 217 3.48456E-60
5 g4691.t5 Gene3D G3DSA:3.40.50.300 - 2 234 3.4E-57
2 g4691.t5 PANTHER PTHR43038 ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 2 230 6.5E-110
3 g4691.t5 PANTHER PTHR43038:SF2 RH61964P 2 230 6.5E-110
1 g4691.t5 Pfam PF00005 ABC transporter 24 167 2.3E-29
7 g4691.t5 ProSitePatterns PS00211 ABC transporters family signature. 140 154 -
9 g4691.t5 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 5 234 18.027
8 g4691.t5 SMART SM00382 AAA_5 33 223 2.3E-11
4 g4691.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 5 231 3.66E-54

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed