General information for g4692.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ABC transporter G family member 20.
Parent gene
- The parent gene g4692 is located on chr_2: 4242846..4244146 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4692 | g4692.t1 | TSS | g4692.t1 | 4238299 | 4238299 |
| chr_2 | g4692 | g4692.t1 | isoform | g4692.t1 | 4238519 | 4242846 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon1 | 4238519 | 4238622 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS1 | 4238519 | 4238622 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon2 | 4240078 | 4240100 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS2 | 4240078 | 4240100 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon3 | 4240450 | 4240545 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS3 | 4240450 | 4240545 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon4 | 4240632 | 4240646 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS4 | 4240632 | 4240646 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon5 | 4240713 | 4241095 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS5 | 4240713 | 4241095 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon6 | 4241159 | 4242159 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS6 | 4241159 | 4242159 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon7 | 4242219 | 4242571 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS7 | 4242219 | 4242571 |
| chr_2 | g4692 | g4692.t1 | exon | g4692.t1.exon8 | 4242635 | 4242846 |
| chr_2 | g4692 | g4692.t1 | cds | g4692.t1.CDS8 | 4242635 | 4242846 |
| chr_2 | g4692 | g4692.t1 | TTS | g4692.t1 | 4242998 | 4242998 |
Sequences
>g4692.t1 Gene=g4692 Length=2187
ATGAATGCCGTTGAAGTTCGAGCAGGCTACAAGTACTATGGAAAGGATAAGGATCCAAAA
ATTGTCTTGAATCGAATCAACATGACAGTGACACACGGATCAATATATGGACTGCTTGGT
GCTAGCGGTTGTGGAAAGACAACATTACTATCATGCATTGTCGGCGTAAAGTTTTTAAAT
GAAGGAAAAATCACAGTGCTAGGTGGAACGCCGGGGAAAATGGGTTCAGGAGTGCCAGGC
CCAAGAGTTGGATATATGCCACAAGAGATTGCTTTAACAGAAGAATTTTCAATCAAAGAG
ACAATTTATTATTTTGGTCGAATCTATGGAATGTCAACAGAAAGAATTAGAGAAAGATAC
AAGCTGCTGCGTGATTTGCTTGATCTTCCAACGGGTTCAAGACAAATTGGCCATTGTAGT
GGTGGTCAACAGAGACGAGTGTCATTTGCAGCAGCCATGGTTCACGAACCAGAATTATTA
ATTCTTGATGAGCCGACAGTTGGTCTCGATCCATTGCTCAGAGAAAAAATTTGGGATTTT
CTAGTGGAAACAACGAGGACGAGTAAACTTGCAGTCATAATTACAACACATTATATTGAA
GAAGCACGACAAGCTAATTGTATAGGATTAATGAGAAATGGAATTTTATTAGCAGAAGAT
TCACCACAAAGTATTCTCAGTAAATATGAAGTTGATTCACTTGAGGATGCTTTTCTACAA
TTGTGTGTAAAGCACGGTGTCTCTGATGAAGCAGATGAGAATTTAAAACAAGTTGATACC
TTCACCTCCCACCAAGAACCAATAGAAATTGAAAAGAAAATTGATGAAAAGCCATCACTG
GTAAAGAATGAAGTAAAAAGAAAAAATTCAATTGAATCAAATGATTCAGAGACAGCTTGC
TGTAGTGGTGTAGGTGATATGGATTGCAATAAAAAGAGTCTAGTAAAGAACTTACAAATC
ACAACCAAGAGACGAATGAAGGCATTATTAGCGAAAAATTTCTTACAAATGTTACGACAA
CCAGCTGGCATGGTTTTTCTTACATGCTTTCCAATCTTTCAACTTGTTTGCTTCTATGTT
GCAGTAGGAGGAAATCCAATCGGTCTTAAATTAGCCATCGTCAATGACGAAATTCAAAAT
ATTAATGACTGCATGAATTCATCTTTAGTTACCACGCACATAAATAATGATACCTGTGAT
CTAAATAAAGTTTCTTGCCGATTCATAAATCAAATCAACAATACTGTTGCCATTAAGTAT
TTCTATGACACATTTGATGCAGCATATCAGGACGCAAAGAAGGGCAAAGTGATGGGTGTG
ATTTATTTTGCAAAAAATTTCACACAATCAATGGCCGATATCAGGGATGAAGGAAGATTT
GCAAATGAAGGATCATTTTTCAATGCTGAAATACAAATTTTTATGGATAAATCTGATCAA
CAACTGACATTCTTTTTAGAGAAAAAATTAAGACAAACATATCAAGAATTTGCTCAAAGT
TTAATGGCTGATTGTAATTATCCGGTTAAACTTGGTAATATTCCAATCGACTTTGAACAA
CCAATTTATGGAAGTTATGATGGTGTTTATACAGACTATATTGCGCCTGGTGTTGTTATG
ACAATGGTATTCTTCCTTGCTACCCTCATTACATCGACAATTTTCATCACAGATCGCCTC
GAGGGTGTTTGGGATCGAACTTTAGTTGCTGGAATTTCAACTACAGAACTTTTAATTGCT
CACATAATCACGCAATCGACAGTAATGCTTGTACAATGTTGCGAAATTGTCATCCTTGCC
GCATTCATTTTTGATACTGAAAATCGTGGTGACAATTTCACAGTTATCTTTTTATTAATG
CTTCTTGGTTTCTCTGGTATGCTCTATGGACTTTTCATTTCAATTTTTTGTGACTCTCAT
ACAATGGCCAATTTTATGGCAACGGGAAGCTTCTATCCAATGATTATTCTTTGCGGAATT
TTTTGGCCACTTGAAGGCATGTCCATATACTTACAATACATTGCATTTCTTCTGCCATTT
ACACTTCCATCAATAGCAGTAAGGAATATTTTAGCAAAAGGCTGGAGCATAGCGCATGCG
AGCGTTATTGCTGGTTATGGCATCACAGTCATTTGGATTGTAGTATTACTAACATTATGT
CTAATAGGTCTAAAAATTAAGAAATAA
>g4692.t1 Gene=g4692 Length=728
MNAVEVRAGYKYYGKDKDPKIVLNRINMTVTHGSIYGLLGASGCGKTTLLSCIVGVKFLN
EGKITVLGGTPGKMGSGVPGPRVGYMPQEIALTEEFSIKETIYYFGRIYGMSTERIRERY
KLLRDLLDLPTGSRQIGHCSGGQQRRVSFAAAMVHEPELLILDEPTVGLDPLLREKIWDF
LVETTRTSKLAVIITTHYIEEARQANCIGLMRNGILLAEDSPQSILSKYEVDSLEDAFLQ
LCVKHGVSDEADENLKQVDTFTSHQEPIEIEKKIDEKPSLVKNEVKRKNSIESNDSETAC
CSGVGDMDCNKKSLVKNLQITTKRRMKALLAKNFLQMLRQPAGMVFLTCFPIFQLVCFYV
AVGGNPIGLKLAIVNDEIQNINDCMNSSLVTTHINNDTCDLNKVSCRFINQINNTVAIKY
FYDTFDAAYQDAKKGKVMGVIYFAKNFTQSMADIRDEGRFANEGSFFNAEIQIFMDKSDQ
QLTFFLEKKLRQTYQEFAQSLMADCNYPVKLGNIPIDFEQPIYGSYDGVYTDYIAPGVVM
TMVFFLATLITSTIFITDRLEGVWDRTLVAGISTTELLIAHIITQSTVMLVQCCEIVILA
AFIFDTENRGDNFTVIFLLMLLGFSGMLYGLFISIFCDSHTMANFMATGSFYPMIILCGI
FWPLEGMSIYLQYIAFLLPFTLPSIAVRNILAKGWSIAHASVIAGYGITVIWIVVLLTLC
LIGLKIKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g4692.t1 | CDD | cd03230 | ABC_DR_subfamily_A | 4 | 216 | 3.62273E-51 |
| 6 | g4692.t1 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 291 | 2.1E-52 |
| 3 | g4692.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 1 | 728 | 0.0 |
| 4 | g4692.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 1 | 728 | 0.0 |
| 2 | g4692.t1 | Pfam | PF00005 | ABC transporter | 23 | 166 | 1.2E-24 |
| 1 | g4692.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 346 | 718 | 3.8E-33 |
| 14 | g4692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 341 | - |
| 21 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 362 | - |
| 8 | g4692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 363 | 532 | - |
| 20 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 533 | 557 | - |
| 11 | g4692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 558 | 576 | - |
| 18 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 577 | 604 | - |
| 7 | g4692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 605 | 615 | - |
| 19 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 616 | 636 | - |
| 13 | g4692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 637 | 641 | - |
| 15 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 642 | 662 | - |
| 10 | g4692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 663 | 668 | - |
| 17 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 669 | 691 | - |
| 12 | g4692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 692 | 702 | - |
| 16 | g4692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 703 | 724 | - |
| 9 | g4692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 725 | 728 | - |
| 30 | g4692.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 139 | 153 | - |
| 33 | g4692.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 4 | 238 | 18.814 |
| 32 | g4692.t1 | ProSiteProfiles | PS51012 | ABC transporter integral membrane type-2 domain profile. | 499 | 727 | 13.529 |
| 31 | g4692.t1 | SMART | SM00382 | AAA_5 | 32 | 222 | 1.7E-9 |
| 5 | g4692.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 228 | 2.46E-49 |
| 29 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 364 | - |
| 24 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 534 | 556 | - |
| 23 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 582 | 604 | - |
| 28 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 613 | 635 | - |
| 27 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 645 | 664 | - |
| 25 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 669 | 687 | - |
| 26 | g4692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 702 | 724 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0043190 | ATP-binding cassette (ABC) transporter complex | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed