General information for g4700.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4700 is located on chr_2: 4264269..4265522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4700 | g4700.t11 | TTS | g4700.t11 | 4263286 | 4263286 |
| chr_2 | g4700 | g4700.t11 | isoform | g4700.t11 | 4263585 | 4264256 |
| chr_2 | g4700 | g4700.t11 | exon | g4700.t11.exon1 | 4263585 | 4264256 |
| chr_2 | g4700 | g4700.t11 | cds | g4700.t11.CDS1 | 4263586 | 4263885 |
| chr_2 | g4700 | g4700.t11 | TSS | g4700.t11 | 4264632 | 4264632 |
Sequences
>g4700.t11 Gene=g4700 Length=672
ACTAATTTTGTTGCTGATATTGATACCGCCAATGGTATGATTTTATTACTACTAAAGAAT
ATAATTTATATTTTATTATTGTACACGTTTCAGATTTTTTCAAAATCGGTGGCTTTTGTA
TTCTTTTGCCTTGTCTCAATTCAAAATATTCTGAAGTGAGAAGTGGAACAGCAGAATTGA
TTGCTGAACTTGCACAAAATAATCCATTCTGTCAAAAACATTTATTAGATCTCGAAGTAC
TGCCAAAATTAATTGAACTTCTCTCAGATGAACCAGAAATCGCTTCACACTCATTCCATG
CCATTTCTTGTCTCGTGAGAAGCTATGAACCAGGCTTGGCGAGTTTTATTGAAATTGGTG
GACTAGAGTGCATGTTGGGACTTATTCAATGCAAAGATCAAGAGAAACTCGTGATAAAAT
CAATGTTTCTTATTTCATCATTCTCAAAAGATTTTCCACCAGTTCGTGATGAGCTTGTTA
AACTTAATGCAATTGAAAGAATAACAACAATTCTCGAACCAAAATCAGACTATGACACAC
TCTTGGAGCAAAGTTTGTCTGCACTTTCTTCACTTATTGAAACAGAAGATGCAATTCAAA
GATGTCGCAATAGCACGATAAATTTACGAGAAAAACTCGAGAAAATAATTCTCGCGGGAA
AAGGAAAAGAAG
>g4700.t11 Gene=g4700 Length=100
MLGLIQCKDQEKLVIKSMFLISSFSKDFPPVRDELVKLNAIERITTILEPKSDYDTLLEQ
SLSALSSLIETEDAIQRCRNSTINLREKLEKIILAGKGKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4700.t11 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 100 | 0e+00 |
| 1 | g4700.t11 | SUPERFAMILY | SSF48371 | ARM repeat | 4 | 92 | 6e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
