General information for g4700.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4700 is located on chr_2: 4264269..4265522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4700 | g4700.t3 | TTS | g4700.t3 | 4263286 | 4263286 |
| chr_2 | g4700 | g4700.t3 | isoform | g4700.t3 | 4263312 | 4264581 |
| chr_2 | g4700 | g4700.t3 | exon | g4700.t3.exon1 | 4263312 | 4263359 |
| chr_2 | g4700 | g4700.t3 | cds | g4700.t3.CDS1 | 4263312 | 4263359 |
| chr_2 | g4700 | g4700.t3 | exon | g4700.t3.exon2 | 4263577 | 4264163 |
| chr_2 | g4700 | g4700.t3 | cds | g4700.t3.CDS2 | 4263577 | 4264163 |
| chr_2 | g4700 | g4700.t3 | exon | g4700.t3.exon3 | 4264223 | 4264581 |
| chr_2 | g4700 | g4700.t3 | cds | g4700.t3.CDS3 | 4264223 | 4264481 |
| chr_2 | g4700 | g4700.t3 | TSS | g4700.t3 | 4264632 | 4264632 |
Sequences
>g4700.t3 Gene=g4700 Length=994
ATGGAAGAAGATGATCAACCAAGACAGCCAAGACAGCCTCACAACTATCAGGCTTTATTA
AAATTCGCAATGGAAGGTAAAATAAAGTGTTGATTCATTAATGAAATGTTTAATTTCACA
ATTTCGTAAATTTTCAGCAACAAAAGATGAAGATCGAACAGAACCATCACGTTTTGAACA
AATGGATCCTGAAAGAAGGAGATTCTTAGAAGAAGCATTAAAATCACTTACAGTAGATGT
AATAGAAGAACTCAATAAAGCCATGGACATTTTAATCAAAGCTGAAGCAAATGAAGAAGA
ACAAGTGCATGCTCTCGAAGTCGTGACTAATTTTGTTGCTGATATTGATACCGCCAATGA
TTTTTTCAAAATCGGTGGCTTTTGTATTCTTTTGCCTTGTCTCAATTCAAAATATTCTGA
AGTGAGAAGTGGAACAGCAGAATTGATTGCTGAACTTGCACAAAATAATCCATTCTGTCA
AAAACATTTATTAGATCTCGAAGTACTGCCAAAATTAATTGAACTTCTCTCAGATGAACC
AGAAATCGCTTCACACTCATTCCATGCCATTTCTTGTCTCGTGAGAAGCTATGAACCAGG
CTTGGCGAGTTTTATTGAAATTGGTGGACTAGAGTGCATGTTGGGACTTATTCAATGCAA
AGATCAAGAGAAACTCGTGATAAAATCAATGTTTCTTATTTCATCATTCTCAAAAGATTT
TCCACCAGTTCGTGATGAGCTTGTTAAACTTAATGCAATTGAAAGAATAACAACAATTCT
CGAACCAAAATCAGACTATGACACACTCTTGGAGCAAAGTTTGTCTGCACTTTCTTCACT
TATTGAAACAGAAGATGCAATTCAAAGATGTCGCAATAGCACGATAAATTTACGAGAAAA
ACTCGAGAAAATAATTCTCGCGGGAAAAGGAAAAGAAGAGTGTCAAGAACAAGTTGAATA
CAGTCAAGCATTGATTGGAAAGATTTTTAAATAA
>g4700.t3 Gene=g4700 Length=297
MKCLISQFRKFSATKDEDRTEPSRFEQMDPERRRFLEEALKSLTVDVIEELNKAMDILIK
AEANEEEQVHALEVVTNFVADIDTANDFFKIGGFCILLPCLNSKYSEVRSGTAELIAELA
QNNPFCQKHLLDLEVLPKLIELLSDEPEIASHSFHAISCLVRSYEPGLASFIEIGGLECM
LGLIQCKDQEKLVIKSMFLISSFSKDFPPVRDELVKLNAIERITTILEPKSDYDTLLEQS
LSALSSLIETEDAIQRCRNSTINLREKLEKIILAGKGKEECQEQVEYSQALIGKIFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4700.t3 | Coils | Coil | Coil | 48 | 68 | - |
| 5 | g4700.t3 | Gene3D | G3DSA:1.25.10.10 | - | 37 | 297 | 1.4E-62 |
| 2 | g4700.t3 | PANTHER | PTHR19316:SF18 | HSP70-BINDING PROTEIN 1 | 12 | 287 | 1.5E-41 |
| 3 | g4700.t3 | PANTHER | PTHR19316 | PROTEIN FOLDING REGULATOR | 12 | 287 | 1.5E-41 |
| 1 | g4700.t3 | Pfam | PF08609 | Nucleotide exchange factor Fes1 | 19 | 87 | 5.9E-6 |
| 4 | g4700.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 36 | 296 | 3.62E-35 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K09562 (hsp70-interacting protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
