Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sodium/potassium-transporting ATPase subunit beta-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4710 g4710.t3 TSS g4710.t3 4344326 4344326
chr_2 g4710 g4710.t3 isoform g4710.t3 4344433 4348373
chr_2 g4710 g4710.t3 exon g4710.t3.exon1 4344433 4344490
chr_2 g4710 g4710.t3 cds g4710.t3.CDS1 4344433 4344490
chr_2 g4710 g4710.t3 exon g4710.t3.exon2 4344546 4344743
chr_2 g4710 g4710.t3 cds g4710.t3.CDS2 4344546 4344743
chr_2 g4710 g4710.t3 exon g4710.t3.exon3 4344803 4345068
chr_2 g4710 g4710.t3 cds g4710.t3.CDS3 4344803 4345068
chr_2 g4710 g4710.t3 exon g4710.t3.exon4 4348071 4348373
chr_2 g4710 g4710.t3 cds g4710.t3.CDS4 4348071 4348373
chr_2 g4710 g4710.t3 TTS g4710.t3 4348645 4348645

Sequences

>g4710.t3 Gene=g4710 Length=825
ATGTGTCTCAAACATCCTTGTTATGAACGATTAAATCGAATTGCGGCGTCCAAACCATTA
CGAATATTTTATGGCGTCATTCTATTTCTATTCGTTGCCTTTGCTTGTTACCGACTTCTG
CAAGCTTCAAATGACTTGCATGCACAGAAAAATGCTCGATTGGAAGTGATCCCAAATTTT
CAGGACAATTTTATTAAATATGAAGTTAGTTCGGGAGCAAATGACATTGTGGCCAAAATC
AATGACGCGCTAATTCAATACGAGACGCCAAATAAAAACCGCCAAAGATGTGACAACAGT
TTTCCAAGTCAAAATAAATCGTGTGACGTTGATTTAAATGAATTTGGACCATGCACAAAA
GAGAATGGCTATGGATATTATAGAGGATCTCCTTGTGTATTTATAAAACTTAAAAAACTT
GAAAATTGGATACCTCAATGTTTGAACAATAGTAATCCTCTACCTGATGACATGCCAATT
TATTTGAAAAATTATATCAGTAATGATCATAATCGCAATCAAAGAGCGATTTGGTTATCA
TGCAGTGGAGAAAAAGATGTTGATGTGGAATATGTTGGAAAAATTGAATATTATCCAAGT
TATGGCTTTCCAATCTATTATTTTCCCTCGAAAAATGATGAAAGTTATTTGGAACCACTA
ATTGCTGTTGAGTTTGTAAAGCCACAACGTGAGTTTTTTTTAATTAATTTTTTTAAATTT
AATCATTTCATTTTTATTCAAGGTGGAATTGCAATTTTCATAAAATGTAAAGTATGGGCA
CAAAATTTAGTCGAAACCACGATTATCAAGCTTTCGCTGGATTAA

>g4710.t3 Gene=g4710 Length=274
MCLKHPCYERLNRIAASKPLRIFYGVILFLFVAFACYRLLQASNDLHAQKNARLEVIPNF
QDNFIKYEVSSGANDIVAKINDALIQYETPNKNRQRCDNSFPSQNKSCDVDLNEFGPCTK
ENGYGYYRGSPCVFIKLKKLENWIPQCLNNSNPLPDDMPIYLKNYISNDHNRNQRAIWLS
CSGEKDVDVEYVGKIEYYPSYGFPIYYFPSKNDESYLEPLIAVEFVKPQREFFLINFFKF
NHFIFIQGGIAIFIKCKVWAQNLVETTIIKLSLD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4710.t3 Gene3D G3DSA:2.60.40.1660 Na 21 236 1.1E-42
2 g4710.t3 PANTHER PTHR11523:SF46 SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 80 262 1.3E-44
3 g4710.t3 PANTHER PTHR11523 SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT 80 262 1.3E-44
1 g4710.t3 Pfam PF00287 Sodium / potassium ATPase beta chain 54 266 9.1E-29
6 g4710.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
8 g4710.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 40 -
7 g4710.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 41 274 -
4 g4710.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006813 potassium ion transport BP
GO:0005890 sodium:potassium-exchanging ATPase complex CC
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values