General information for g4710.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sodium/potassium-transporting ATPase subunit beta-2.
Parent gene
- The parent gene g4710 is located on chr_2: 4348078..4348437 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4710 | g4710.t5 | TSS | g4710.t5 | 4344326 | 4344326 |
| chr_2 | g4710 | g4710.t5 | isoform | g4710.t5 | 4344433 | 4348373 |
| chr_2 | g4710 | g4710.t5 | exon | g4710.t5.exon1 | 4344433 | 4344743 |
| chr_2 | g4710 | g4710.t5 | exon | g4710.t5.exon2 | 4344803 | 4345068 |
| chr_2 | g4710 | g4710.t5 | cds | g4710.t5.CDS1 | 4345018 | 4345068 |
| chr_2 | g4710 | g4710.t5 | exon | g4710.t5.exon3 | 4348071 | 4348236 |
| chr_2 | g4710 | g4710.t5 | cds | g4710.t5.CDS2 | 4348071 | 4348236 |
| chr_2 | g4710 | g4710.t5 | exon | g4710.t5.exon4 | 4348291 | 4348373 |
| chr_2 | g4710 | g4710.t5 | cds | g4710.t5.CDS3 | 4348291 | 4348373 |
| chr_2 | g4710 | g4710.t5 | TTS | g4710.t5 | 4348645 | 4348645 |
Sequences
>g4710.t5 Gene=g4710 Length=826
ATGTGTCTCAAACATCCTTGTTATGAACGATTAAATCGAATTGCGGCGTCCAAACCATGT
AAGTTGTGTAAAAATCTAAAGAAAATTAGCTAAATTTAATCAATAATTTGCAGTACGAAT
ATTTTATGGCGTCATTCTATTTCTATTCGTTGCCTTTGCTTGTTACCGACTTCTGCAAGC
TTCAAATGACTTGCATGCACAGAAAAATGCTCGATTGGAAGTGATCCCAAATTTTCAGGA
CAATTTTATTAAATATGAAGTTAGTTCGGGAGCAAATGACATTGTGGCCAAAATCAATGA
CGCGCTAATTCAATACGAGACGCCAAATAAAAACCGCCAAAGATGTGACAACAGTTTTCC
AAGTCAAAATAAATCGTGTGACGTTGATTTAAATGAATTTGGACCATGCACAAAAGAGAA
TGGCTATGGATATTATAGAGGATCTCCTTGTGTATTTATAAAACTTAAAAAACTTGAAAA
TTGGATACCTCAATGTTTGAACAATAGTAATCCTCTACCTGATGACATGCCAATTTATTT
GAAAAATTATATCAGTAATGATCATAATCGCAATCAAAGAGCGATTTGGTTATCATGCAG
TGGAGAAAAAGATGTTGATGTGGAATATGTTGGAAAAATTGAATATTATCCAAGTTATGG
CTTTCCAATCTATTATTTTCCCTCGAAAAATGATGAAAGTTATTTGGAACCACTAATTGC
TGTTGAGTTTGTAAAGCCACAACGTGGAATTGCAATTTTCATAAAATGTAAAGTATGGGC
ACAAAATTTAGTCGAAACCACGATTATCAAGCTTTCGCTGGATTAA
>g4710.t5 Gene=g4710 Length=99
MPIYLKNYISNDHNRNQRAIWLSCSGEKDVDVEYVGKIEYYPSYGFPIYYFPSKNDESYL
EPLIAVEFVKPQRGIAIFIKCKVWAQNLVETTIIKLSLD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4710.t5 | Gene3D | G3DSA:2.60.40.1660 | Na | 1 | 97 | 0 |
| 2 | g4710.t5 | PANTHER | PTHR11523:SF46 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 | 1 | 89 | 0 |
| 3 | g4710.t5 | PANTHER | PTHR11523 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT | 1 | 89 | 0 |
| 1 | g4710.t5 | Pfam | PF00287 | Sodium / potassium ATPase beta chain | 13 | 91 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006813 | potassium ion transport | BP |
| GO:0005890 | sodium:potassium-exchanging ATPase complex | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed