Gene loci information

Transcript annotation

  • This transcript has been annotated as Tyrosine-protein kinase Dnt.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4739 g4739.t1 isoform g4739.t1 4547635 4549370
chr_2 g4739 g4739.t1 exon g4739.t1.exon1 4547635 4548978
chr_2 g4739 g4739.t1 cds g4739.t1.CDS1 4547635 4548978
chr_2 g4739 g4739.t1 exon g4739.t1.exon2 4549112 4549188
chr_2 g4739 g4739.t1 cds g4739.t1.CDS2 4549112 4549188
chr_2 g4739 g4739.t1 exon g4739.t1.exon3 4549259 4549370
chr_2 g4739 g4739.t1 cds g4739.t1.CDS3 4549259 4549370
chr_2 g4739 g4739.t1 TTS g4739.t1 4549914 4549914
chr_2 g4739 g4739.t1 TSS g4739.t1 NA NA

Sequences

>g4739.t1 Gene=g4739 Length=1533
ATGTATTATGTCCGTGACGGATTAGTAAACAGACATGCTTTACAATATACAGTACCAATT
GGCGAAAATATTCAAGATATTTCATTTACATGGCAAAGTTTAGCAGGACGTCCATTACCT
TATCGCATTACAATTGTAACTGCAGATCCAATTGTGCTTCCTCGTCCTCAACTTAATATC
AGTCGCCTTGGTGAAATGCCACAAGAAATTGAAACCTTTTCAATTGAAATGAAATGTTCG
GGTGTAAAATCTGCTGAAGTGGATGTCACAATATCCATTGAAGTGACGCTTAATCGAGTT
TCTAACAACATATCAGAACTTGTGTTTACTAGAAGAAAAATGTGCTTACAAAATAATATA
TTTGAACCAAATAATACATTTACAAATGACACTAACGAGATACCATTTACACATACTGCC
ACAACAACAACTAAAGCACCAAATGCAATTGTCACTTTAATCGTGGGTGGAGCTCTTGCT
GTCATAGTTGTTTTTGCTCTTATCCTTGTGGCTTATTGTGCTCGTGGTGTGACAAAACGT
AAACCACCACATGTGACTCAAACGCCAGCAAGAACTGCCAGTTTTCAACGTCTTCAAGCA
AATCCTTCTTCCTTGGCACCATATATTTGCCCAACAAATATTTCAGCATCAGCATCACCA
CAAATTAACATATCAAAACCAGAAGAACTTCATCGTCGTATTTCTGAAATTACAGTCGAA
CGTTGTCGTGTTCGTTTATCAAATTTACTTCAAGAAGGTACATTCGGTCGTGTCTATCGT
GGAACATACAATGATGATCAAGAAGTTTTTGTAAAAACTGTTAACGAACAAGCAAATCAA
AATCAAGTCTCATTGCTATTACAAGAAGGCATGAGTCTTTATGGAGCTTGTCATATTGGA
ATTTTATCTGTTTTCGGTGTCTCAATTGAAGACCATGCTGCTCCTTTCTTACTTTATATG
GCTGATAATAATTCAAAAAATTTGAAATTGTTTCTACAAGAACCAATTGCAAGAAGTCTC
ACAACTATTCAAATTGTTCAAATGGCTCAACAATTAGCAGCTGCAATTTGTCATTTGCAT
GCTCATGGAGTTCTACACAAAGATATTGCTGCTAGAAATTGCGTAATTGATGATGATTTA
ACTGTAAAATTGACAGACAATTCTCTGTCTCGAGATCTCTTTCCACAAGATTATCATTGT
CTTGGTGATCGTGAAAATCGACCTGTCAAATGGCTCTCGCTTGAGGCTCTCACTAAAAAG
CAATTCAGTGAAGCATCTGATGCTTGGGCATTTGGTGTTTTGATTTGGGAATTGTGCACG
TTAGCTAAATCACCTTATAACGATATTGATGCCTTCGAGATCGAAAATTATTTACGTGAT
GGATATCGATTAGCACAACCGGCGAATTGCCCTGATGAATTATTCACAATCATGGCTTAT
TGCTGGGCTGTTTCAATTTTAGAGCGTCCGACATTTAAACAATTGCAATTTTGTTTGCAA
GATTTTTATAATCAACTCACACGCTTTGTATGA

>g4739.t1 Gene=g4739 Length=510
MYYVRDGLVNRHALQYTVPIGENIQDISFTWQSLAGRPLPYRITIVTADPIVLPRPQLNI
SRLGEMPQEIETFSIEMKCSGVKSAEVDVTISIEVTLNRVSNNISELVFTRRKMCLQNNI
FEPNNTFTNDTNEIPFTHTATTTTKAPNAIVTLIVGGALAVIVVFALILVAYCARGVTKR
KPPHVTQTPARTASFQRLQANPSSLAPYICPTNISASASPQINISKPEELHRRISEITVE
RCRVRLSNLLQEGTFGRVYRGTYNDDQEVFVKTVNEQANQNQVSLLLQEGMSLYGACHIG
ILSVFGVSIEDHAAPFLLYMADNNSKNLKLFLQEPIARSLTTIQIVQMAQQLAAAICHLH
AHGVLHKDIAARNCVIDDDLTVKLTDNSLSRDLFPQDYHCLGDRENRPVKWLSLEALTKK
QFSEASDAWAFGVLIWELCTLAKSPYNDIDAFEIENYLRDGYRLAQPANCPDELFTIMAY
CWAVSILERPTFKQLQFCLQDFYNQLTRFV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g4739.t1 Gene3D G3DSA:2.60.40.2170 - 1 122 1.2E-21
12 g4739.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 207 319 1.5E-15
13 g4739.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 320 509 5.9E-43
4 g4739.t1 PANTHER PTHR24416:SF531 DERAILED 2, ISOFORM B 1 155 3.4E-106
6 g4739.t1 PANTHER PTHR24416 TYROSINE-PROTEIN KINASE RECEPTOR 1 155 3.4E-106
3 g4739.t1 PANTHER PTHR24416:SF531 DERAILED 2, ISOFORM B 221 507 3.4E-106
5 g4739.t1 PANTHER PTHR24416 TYROSINE-PROTEIN KINASE RECEPTOR 221 507 3.4E-106
10 g4739.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 358 376 1.8E-20
8 g4739.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 407 417 1.8E-20
7 g4739.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 426 448 1.8E-20
9 g4739.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 470 492 1.8E-20
2 g4739.t1 Pfam PF02019 WIF domain 1 115 1.4E-31
1 g4739.t1 Pfam PF07714 Protein tyrosine and serine/threonine kinase 245 497 9.0E-65
16 g4739.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 148 -
17 g4739.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 149 174 -
15 g4739.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 175 510 -
19 g4739.t1 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 364 376 -
21 g4739.t1 ProSiteProfiles PS50814 WIF domain profile. 1 115 40.943
22 g4739.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 244 503 26.026
20 g4739.t1 SMART SM00469 WIF_1 1 117 3.9E-38
11 g4739.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 237 500 5.33E-54
18 g4739.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 150 172 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values