Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1, isoform C.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4743 g4743.t1 TTS g4743.t1 4616940 4616940
chr_2 g4743 g4743.t1 isoform g4743.t1 4617050 4617756
chr_2 g4743 g4743.t1 exon g4743.t1.exon1 4617050 4617370
chr_2 g4743 g4743.t1 cds g4743.t1.CDS1 4617050 4617370
chr_2 g4743 g4743.t1 exon g4743.t1.exon2 4617427 4617756
chr_2 g4743 g4743.t1 cds g4743.t1.CDS2 4617427 4617756
chr_2 g4743 g4743.t1 TSS g4743.t1 4617810 4617810

Sequences

>g4743.t1 Gene=g4743 Length=651
ATGAAGTTATATCATACACCAGGGAGTCCACCTAGTCGAAGTGTTTTGATGACTTTGAGA
TGTTTAGAAATTGACGTAGAAATTCATGAAATTGATTTAAGAAAAGGCGAAAATAGAACA
GCAGATTTTTTAAAAATTAATCCACTTGGTCAAATTCCTGTTTTGGATGATGGCTTCATT
TTAACAGAATCGCGTGCTATAATGACTTATTTGGCAAATTCTAGAAAAAATGAAAAGCTT
TATCCATCCGATCCAAGAAAGCGTGCAATTGTTGACTCACGTCTTTATTTTGACGCTACT
GGTCTATTTGTACACATTTTTGCCGCTCTGAGTCCAATGTTTTTTAAAGGCACAACGGAA
GTCACGCCTGAAGTTCGTGAGAAATTGAAAAACGCCCTGAAATATCTTGAGGGTATTTTG
GAGAAGCAAAAGTTTTTTGCGGGCGATGAAGCAACTTTGGCTGATATTTCAATTCTCTCA
ACTGTAGTTCAAATTAAAAATACTTTTGGTGGTCTTGGAAACTTTAGCAATTTAAAAGCA
TGGTTTGAAAGATGCAACATTTTACCAGGCTATGATGAAAATTTAGTTGGAGCTCAAATG
ATTAAAGAATTTTTTGAAAAGGCAACTTTTAAGATTGCTCCATTGGAATGA

>g4743.t1 Gene=g4743 Length=216
MKLYHTPGSPPSRSVLMTLRCLEIDVEIHEIDLRKGENRTADFLKINPLGQIPVLDDGFI
LTESRAIMTYLANSRKNEKLYPSDPRKRAIVDSRLYFDATGLFVHIFAALSPMFFKGTTE
VTPEVREKLKNALKYLEGILEKQKFFAGDEATLADISILSTVVQIKNTFGGLGNFSNLKA
WFERCNILPGYDENLVGAQMIKEFFEKATFKIAPLE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4743.t1 CDD cd03177 GST_C_Delta_Epsilon 86 202 4.33133E-33
7 g4743.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 76 6.2E-28
6 g4743.t1 Gene3D G3DSA:1.20.1050.10 - 77 215 8.8E-40
3 g4743.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 207 6.0E-58
2 g4743.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 73 3.8E-16
1 g4743.t1 Pfam PF00043 Glutathione S-transferase, C-terminal domain 118 188 3.8E-12
8 g4743.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 94 -
10 g4743.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 115 -
9 g4743.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 116 216 -
13 g4743.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 79 19.571
12 g4743.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 84 204 19.51
14 g4743.t1 SFLD SFLDG00358 Main (cytGST) 1 209 0.0
15 g4743.t1 SFLD SFLDG01153 Main.4: Theta-like 1 209 0.0
4 g4743.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 88 1.76E-25
5 g4743.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 77 208 5.46E-28

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed