Gene loci information

Transcript annotation

  • This transcript has been annotated as Multidrug resistance-associated protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4753 g4753.t2 isoform g4753.t2 4710648 4722176
chr_2 g4753 g4753.t2 exon g4753.t2.exon1 4710648 4710656
chr_2 g4753 g4753.t2 cds g4753.t2.CDS1 4710648 4710656
chr_2 g4753 g4753.t2 exon g4753.t2.exon2 4710802 4711024
chr_2 g4753 g4753.t2 cds g4753.t2.CDS2 4710802 4711024
chr_2 g4753 g4753.t2 exon g4753.t2.exon3 4711097 4711215
chr_2 g4753 g4753.t2 cds g4753.t2.CDS3 4711097 4711215
chr_2 g4753 g4753.t2 exon g4753.t2.exon4 4711279 4711377
chr_2 g4753 g4753.t2 cds g4753.t2.CDS4 4711279 4711377
chr_2 g4753 g4753.t2 exon g4753.t2.exon5 4715888 4716108
chr_2 g4753 g4753.t2 cds g4753.t2.CDS5 4715888 4716108
chr_2 g4753 g4753.t2 exon g4753.t2.exon6 4717402 4717431
chr_2 g4753 g4753.t2 cds g4753.t2.CDS6 4717402 4717431
chr_2 g4753 g4753.t2 exon g4753.t2.exon7 4717557 4718245
chr_2 g4753 g4753.t2 cds g4753.t2.CDS7 4717557 4718245
chr_2 g4753 g4753.t2 exon g4753.t2.exon8 4718322 4718395
chr_2 g4753 g4753.t2 cds g4753.t2.CDS8 4718322 4718395
chr_2 g4753 g4753.t2 exon g4753.t2.exon9 4718453 4718853
chr_2 g4753 g4753.t2 cds g4753.t2.CDS9 4718453 4718853
chr_2 g4753 g4753.t2 exon g4753.t2.exon10 4718913 4718997
chr_2 g4753 g4753.t2 cds g4753.t2.CDS10 4718913 4718997
chr_2 g4753 g4753.t2 exon g4753.t2.exon11 4719436 4719582
chr_2 g4753 g4753.t2 cds g4753.t2.CDS11 4719436 4719582
chr_2 g4753 g4753.t2 exon g4753.t2.exon12 4719916 4720062
chr_2 g4753 g4753.t2 cds g4753.t2.CDS12 4719916 4720062
chr_2 g4753 g4753.t2 exon g4753.t2.exon13 4720265 4720283
chr_2 g4753 g4753.t2 cds g4753.t2.CDS13 4720265 4720283
chr_2 g4753 g4753.t2 exon g4753.t2.exon14 4720429 4721729
chr_2 g4753 g4753.t2 cds g4753.t2.CDS14 4720429 4721729
chr_2 g4753 g4753.t2 exon g4753.t2.exon15 4721794 4722087
chr_2 g4753 g4753.t2 cds g4753.t2.CDS15 4721794 4722087
chr_2 g4753 g4753.t2 exon g4753.t2.exon16 4722147 4722176
chr_2 g4753 g4753.t2 cds g4753.t2.CDS16 4722147 4722176
chr_2 g4753 g4753.t2 TSS g4753.t2 4722297 4722297
chr_2 g4753 g4753.t2 TTS g4753.t2 NA NA

Sequences

>g4753.t2 Gene=g4753 Length=3888
ATGGATGAATTTTGTGGATCCGAATTTTGGAATAATTCGGTGACTTGGGAGACTGATTCA
CCTCATTTTACAAGATGCTTTGAACAAACAGTTCTCGTGTGGATACCATGCGCTTTTCTT
TGGATATTTGCAGCCCTTGATGTATTTTATATGCGAAATAGCAAAGACCGGAACATACCG
AAAGGAATCCTCAACATTTCAAAATTGATTCTCACTGCCCTGATTACAATTTTAACAATA
TGCGACCTCGTCTATGCAATAACATATAAAGGAGAAACCTTTCCTGTTAACTTCTATACA
CCCGTTATAAAAATTGCAACATTTATACTCGCCGGTGTTTTGGTGCATTTCAATCGATTA
TATGGCATGCGCGTCTCAGGATTACTCTTCATTTTCTGGTTTTTAATGACAGTTTTCCAC
ATTCCACGATTATTAACGGAAATTCGACTCAATAATAACCGAGTTGATTCAGAAGACTTT
GATTACCAAGAATCGTTTGATTCAGAGCATTACAATTTTGTTAGTTTCATCATTTTCTTC
GTTCTTAGCTGTTTAATTCTTATTCTCAATTGTTTTGCTGACTCGCAACCACAAGACATG
AAATACCCACCGAGTGATAAACCTTGTCCAGAAGCTAGTGCCAGTTTTCTATCGAGACTC
TTCTTTCATTGGTTTGACTCATTTGTTTGGCTTGGATATCGTCGTCCTCTTGAAAATAAA
GATTTATGGAGTATGAATGCTGAAGACACTTCTGCTGAAGTTGCACCTAGATTTCTCAAA
TATTGGAATCAATCAGTTGCTAAAAATTCTCAAGTTGAACCTTACAATGCTGTCCAATCA
GCCTCATTCAAGAAATCATCAGCAAGCATCAATTTTACAAGTGGAAAAGCAAAGAAGCCA
TCATCAATTTTACCCGCTTTAGTTAAAGCTTTTGGAGCAACTTTCTTGTTTGGAAGCGTA
CTCAAATTGGTCAACGATCTTTTAACTTTTGTTTCACCACAAATTCTTAAACTTTTGATC
AATTTTGTGAGTGAAGATGAACCATTGTGGAGAGGCTATCTTTATGCAGGCTTACTCTTT
GGTGTGGCTACAACTCAAACGCTCTTTTTAGCTCAATATTTTCATCGAATGTTTTTGGTT
GGTTTGAGAATCAGAACAGCTTTGATTTCAGCAATTTTCCGAAAAGCTCTAGTGCTTTCA
AATGTTGCTAAGAAAGAAACAACTGTCGGTGAAATCGTTAACTTAATGGCAGTCGACGCG
CAAAGATTTATGGACCTTGTCACATATCTCAATATGATTTGGTCAGCACCTCTTCAAATT
TCTCTTGCAATTTATTTCTTATGGCAAATACTTGGACCAAGTGTTCTCGCTGGTTTGGCT
GTCATGATTGTTCTTATTCCTGTCAACGGTGTTATTGCTAACAAGGCAAAGAATCTCCAA
ATCAAGCAGATGAAAAATAAAGACGAACGTGTTAAAATGATGAATGAAATTCTCAATGGT
ATCAAAGTATTGAAACTTTATGCTTGGGAGCCAAGTTTTGAGCAACAGGTGTTGAAAATT
CGTGACAAGGAAGTGCATGTCTTGAAGCAAGCTGCTTATTTAAATGCTGGAACATCTTTC
ATTTGGTCGTGTGCTCCATTTATGGTTTCATTAATTACTTTTGCCACATACGTTATGTCA
TCAAATGAACATATTTTAACGCCCACAAGAGCTTTTGTTTGCCTCACATTATTTGATTTG
ATTCGAATGCCATTGGCTTTGTTGCCATTGCTTATCGTGTACATCATTGAGGTGGCACTT
AGTACTTTCGCCACTTATGTTTTGGTAGACGACAATAATATACTTGATGCTAAGACGGCC
TTTACCTCACTTGCATTGTTTAACATTCTTCGTTTTCCACTAAGTATGTTACCTATGCTC
ATCTCAAACATGGTGCAAACAAGTGTTTCAGTGAAGCGTATAAATAAATTTATGAATGGC
GAAGAATTGGATCCAAATAATGTTCAACATGATACATCAGAGAAAAATCCACTTTTAATT
GAGAACGGAACATTCTCATGGGGAGACGAAAATAGCACTTTGAAAAATATTAATATGCAA
ATTGAAAGTAACAAACTTGTAGCAATTGTTGGTTCAGTAGGAAGTGGCAAATCATCATTG
ATATCAGCTTTCCTCGGTGAAATGGAAAAAATTTCAGGTCGAGTCAATACAATTGGTTCA
ATTGCTTATGTTCCACAACAATCATGGATACAAAATGCGACATTGAAGGATAATATTTTG
TTTGGACGACCTTTTGACAAAAAACGTTATGAACAAATCATTGAAGCTTGTGCTCTTAAA
CCTGATCTTGAAATTTTACCTGGCGGTGATCAAACTGAAATTGGTGAAAAGGGAATTAAT
TTATCAGGTGGACAAAAGCAAAGAGTTTCTCTTGCACGAGCAGTATACAACAATGCAGAC
ATTTATTTCTTTGACGATCCATTATCTGCAGTTGACAGTCATGTGGGCAAGCATATATTT
GATAAGGTCATCGGTCCGGAAGGAATCCTTGCACGAAAGACACGAGTTTTAGTAACGCAT
GGTTTGACATACTTAAAGAAATGCGACAACATTTTTGTACTTAAGGATGGTGAAATCTCA
GAGCAAGGCACTCATCAAGAATTGCTTGACAAGAAAGGAGCTTTTGCCGAGTTTCTTATT
CAACATTTACAGGAAGTTAACGAAGATACGGAAAATATTGACGAAATTAAGGCACAGCTT
GAGGGTTTAGTGACAGACAAAGAGCTTAAAGCGAAATTTGACCGCGCAATAAGTACAACA
AGATCAAGATCAGACAGCACATCGAGTGGTGGAAGCGGAAAACTCTCAAGACAAACTTCG
TCAAATAGCGAAACTGAACTAAGACACCGTCGTGCTTCAGAATCTCCCGCAAAACAAGCA
GATACTTCAAAACAAAATGGTACGCAACAACAAAAATTAATTGAGAGTGAAAAATCCGAA
ACAGGCAGTGTTAAATGGGAGGTTTATAAGCATTATTTGAAGAGCATTGGTTGGTGGTTA
GCTGGAGCAACAGTTGTGCTTAATATGATTTTCCAAGGCTTCTCTATTGGTTCTAATATT
TGGCTCGCAAGATGGTCAAATGATGATGCTGCTGCTAATGATACTGGAAAGAGAGATATG
TATTTAGGCGGCTATGCGGCTTTCGGTCTTGGTCAGGTGTTTTCACAATTTGTGATGTCA
TTGATCTATTCATTGGGTGCGATTTTTGCTGCACAAAAATTACATACTGTTCTCGTCAAA
AATTTGTTTCGATTGCCTATTTTGTTTTTTGATACTACACCGTTGGGCCGTGTGCTTAAT
CGAGTATCAAAGGATGTCGATGTCCTTGACAATCAGCTGCCACATTCCTCGCGTATGCTG
GTAGCGATGTCGTTTACTGTGATGGCTACCATTGCTGTAATTTCATATTCAACGCCAATT
TTCCTTGTCGTAATTGTGCCAATTGCAATTCTTTACTACTTCGTCCAACGTTTTTATGTT
GCAACGTCACGTCAATTGAAACGACTCGAGTCCGTATCACGATCGCCCATTTATTCGCAT
TTTGGCGAAAGCATCAGCGGCACTTCAACCATTCGTGCTTACAATGTTGAACCGAGATTT
ATTAACGAATCGGAAGAGAAAGTTGATTTCAATCAAGTATGTTACTTTCCTTCAATTATT
GCAAATCGTTGGTTAGCAGTGAGATTGGAAATTGTTGGAAATCTAATCATTCTGTTTGCT
GCACTCTTCGCTGTTATGGGCAAAAATTCATTGTCGCCTGGTCTTGTCGGTTTGTCAGTT
TCATATGCATTATCCGTTACACAAACACTCAACTGGCTGGTTCGGTAA

>g4753.t2 Gene=g4753 Length=1295
MDEFCGSEFWNNSVTWETDSPHFTRCFEQTVLVWIPCAFLWIFAALDVFYMRNSKDRNIP
KGILNISKLILTALITILTICDLVYAITYKGETFPVNFYTPVIKIATFILAGVLVHFNRL
YGMRVSGLLFIFWFLMTVFHIPRLLTEIRLNNNRVDSEDFDYQESFDSEHYNFVSFIIFF
VLSCLILILNCFADSQPQDMKYPPSDKPCPEASASFLSRLFFHWFDSFVWLGYRRPLENK
DLWSMNAEDTSAEVAPRFLKYWNQSVAKNSQVEPYNAVQSASFKKSSASINFTSGKAKKP
SSILPALVKAFGATFLFGSVLKLVNDLLTFVSPQILKLLINFVSEDEPLWRGYLYAGLLF
GVATTQTLFLAQYFHRMFLVGLRIRTALISAIFRKALVLSNVAKKETTVGEIVNLMAVDA
QRFMDLVTYLNMIWSAPLQISLAIYFLWQILGPSVLAGLAVMIVLIPVNGVIANKAKNLQ
IKQMKNKDERVKMMNEILNGIKVLKLYAWEPSFEQQVLKIRDKEVHVLKQAAYLNAGTSF
IWSCAPFMVSLITFATYVMSSNEHILTPTRAFVCLTLFDLIRMPLALLPLLIVYIIEVAL
STFATYVLVDDNNILDAKTAFTSLALFNILRFPLSMLPMLISNMVQTSVSVKRINKFMNG
EELDPNNVQHDTSEKNPLLIENGTFSWGDENSTLKNINMQIESNKLVAIVGSVGSGKSSL
ISAFLGEMEKISGRVNTIGSIAYVPQQSWIQNATLKDNILFGRPFDKKRYEQIIEACALK
PDLEILPGGDQTEIGEKGINLSGGQKQRVSLARAVYNNADIYFFDDPLSAVDSHVGKHIF
DKVIGPEGILARKTRVLVTHGLTYLKKCDNIFVLKDGEISEQGTHQELLDKKGAFAEFLI
QHLQEVNEDTENIDEIKAQLEGLVTDKELKAKFDRAISTTRSRSDSTSSGGSGKLSRQTS
SNSETELRHRRASESPAKQADTSKQNGTQQQKLIESEKSETGSVKWEVYKHYLKSIGWWL
AGATVVLNMIFQGFSIGSNIWLARWSNDDAAANDTGKRDMYLGGYAAFGLGQVFSQFVMS
LIYSLGAIFAAQKLHTVLVKNLFRLPILFFDTTPLGRVLNRVSKDVDVLDNQLPHSSRML
VAMSFTVMATIAVISYSTPIFLVVIVPIAILYYFVQRFYVATSRQLKRLESVSRSPIYSH
FGESISGTSTIRAYNVEPRFINESEEKVDFNQVCYFPSIIANRWLAVRLEIVGNLIILFA
ALFAVMGKNSLSPGLVGLSVSYALSVTQTLNWLVR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
56 g4753.t2 CDD cd18595 ABC_6TM_MRP1_2_3_6_D1_like 317 654 4.3431E-168
54 g4753.t2 CDD cd03250 ABCC_MRP_domain1 680 878 5.66595E-118
55 g4753.t2 CDD cd18603 ABC_6TM_MRP1_2_3_6_D2_like 1024 1295 1.26732E-150
14 g4753.t2 Coils Coil Coil 899 926 -
13 g4753.t2 Gene3D G3DSA:1.20.1560.10 - 304 593 2.3E-19
11 g4753.t2 Gene3D G3DSA:3.40.50.300 - 646 924 1.7E-76
12 g4753.t2 Gene3D G3DSA:1.20.1560.10 - 983 1295 6.4E-39
78 g4753.t2 MobiDBLite mobidb-lite consensus disorder prediction 940 996 -
79 g4753.t2 MobiDBLite mobidb-lite consensus disorder prediction 940 962 -
76 g4753.t2 MobiDBLite mobidb-lite consensus disorder prediction 963 977 -
77 g4753.t2 MobiDBLite mobidb-lite consensus disorder prediction 978 996 -
5 g4753.t2 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 77 600 0.0
7 g4753.t2 PANTHER PTHR24223:SF405 CANALICULAR MULTISPECIFIC ORGANIC ANION TRANSPORTER 2 77 600 0.0
4 g4753.t2 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 598 1295 0.0
6 g4753.t2 PANTHER PTHR24223:SF405 CANALICULAR MULTISPECIFIC ORGANIC ANION TRANSPORTER 2 598 1295 0.0
1 g4753.t2 Pfam PF00664 ABC transporter transmembrane region 317 585 1.5E-39
3 g4753.t2 Pfam PF00005 ABC transporter 694 828 3.7E-21
2 g4753.t2 Pfam PF00664 ABC transporter transmembrane region 1025 1287 3.1E-42
30 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 30 -
48 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 31 50 -
22 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 51 61 -
52 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 62 86 -
28 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 87 97 -
38 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 115 -
19 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 116 126 -
42 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 127 145 -
27 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 146 172 -
51 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 173 193 -
20 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 194 305 -
35 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 306 324 -
26 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 325 352 -
53 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 353 374 -
16 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 375 425 -
36 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 426 448 -
34 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 449 453 -
46 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 454 474 -
18 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 475 538 -
41 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 539 559 -
33 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 560 564 -
45 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 565 581 -
24 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 582 587 -
47 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 588 609 -
31 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 610 620 -
43 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 621 645 -
23 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 646 1017 -
50 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1018 1042 -
32 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1043 1061 -
44 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1062 1090 -
21 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1091 1101 -
40 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1102 1122 -
29 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1123 1141 -
49 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1142 1175 -
17 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1176 1244 -
37 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1245 1265 -
25 g4753.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1266 1270 -
39 g4753.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1271 1294 -
15 g4753.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1295 1295 -
75 g4753.t2 ProSitePatterns PS00211 ABC transporters family signature. 801 815 -
81 g4753.t2 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 316 597 38.522
82 g4753.t2 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 678 901 23.003
80 g4753.t2 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 1023 1295 38.543
74 g4753.t2 SMART SM00382 AAA_5 703 973 1.5E-7
9 g4753.t2 SUPERFAMILY SSF90123 ABC transporter transmembrane region 306 665 3.38E-36
10 g4753.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 672 899 2.66E-59
8 g4753.t2 SUPERFAMILY SSF90123 ABC transporter transmembrane region 1006 1294 4.97E-55
70 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
62 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 64 86 -
60 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 96 118 -
63 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 125 144 -
67 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 171 193 -
71 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 302 321 -
58 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 352 374 -
57 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 426 448 -
68 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 452 474 -
72 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 539 561 -
61 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 585 607 -
69 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 620 642 -
65 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1018 1040 -
59 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1061 1083 -
73 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1153 1175 -
66 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1245 1267 -
64 g4753.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1272 1294 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values