General information for g4781.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proteasome subunit beta type-7.
Parent gene
- The parent gene g4781 is located on chr_2: 4944008..4944662 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4781 | g4781.t2 | TSS | g4781.t2 | 4943648 | 4943648 |
| chr_2 | g4781 | g4781.t2 | isoform | g4781.t2 | 4943699 | 4944662 |
| chr_2 | g4781 | g4781.t2 | exon | g4781.t2.exon1 | 4943699 | 4943753 |
| chr_2 | g4781 | g4781.t2 | exon | g4781.t2.exon2 | 4943814 | 4943911 |
| chr_2 | g4781 | g4781.t2 | exon | g4781.t2.exon3 | 4943998 | 4944662 |
| chr_2 | g4781 | g4781.t2 | cds | g4781.t2.CDS1 | 4944108 | 4944662 |
| chr_2 | g4781 | g4781.t2 | TTS | g4781.t2 | 4944681 | 4944681 |
Sequences
>g4781.t2 Gene=g4781 Length=818
ATGTTGAATAATTTTGCTACTTTGGATGAAGAAAGAGGATTTAGTTTTAGAAATTAAATG
CTCAATTAGTTGCAAATGGTTTTATTCCTCCAAAAGCGATTAAAACTGGTACGACAATCT
GCGGTGTCACTTATAAAGATGGTGTTGTTTTAGGTTGTGACACAAGAACAACAATTGGCA
ACATCATTTGGGAGAAAAAATGTGAGAAAATTTATAAAATTCAGAATAATATTTTTGTAG
CAGGAGCTGGAACCGCTGCTGATATGGATGGAATGGTTAAATGGATGCGCAGTAATATGG
AATTGCATAGATTAAATACTAATAGAAAAATAGTTCCAGTTATTACATTAGTGACAACTT
TAAGTCATCATTTCTTTAGATATGGCGGTGCAATTTCTTGTGTCTTTTTAATAGGCGGTG
TTGACAATAATGGACCACATTTGCATGTTGTTTATAAACATGGCTCAAAAATGAAACTAC
CTTATGCTACAATGGGTTCTGGTTCTTATGCAGCGATGACAATTCTTGAAACTCGTTGGA
AACCAGATATGACTGAGCAGGAAGCTAAAGAATTAGTTGCAGATGCAATCACATCTGGTG
TTGTTAATGACTTGGGTTCAGGGACAAATGTTAATTTATGTGTCATTAGAAAGAGCTCAT
CTGAAAAAATTAATGGCTATAGAGAAATTTGTGGAAATGGAAAAAGAATTCTTGATTACT
CTATAAAACATGGCACAACTGGCATAATATCAGAAACAATTAAAAAGATTGAATTGGATG
TTATTGAAGAGCAGATTGAAAAAATGGAAGTTGAATAA
>g4781.t2 Gene=g4781 Length=184
MDGMVKWMRSNMELHRLNTNRKIVPVITLVTTLSHHFFRYGGAISCVFLIGGVDNNGPHL
HVVYKHGSKMKLPYATMGSGSYAAMTILETRWKPDMTEQEAKELVADAITSGVVNDLGSG
TNVNLCVIRKSSSEKINGYREICGNGKRILDYSIKHGTTGIISETIKKIELDVIEEQIEK
MEVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4781.t2 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 184 | 0.0e+00 |
| 3 | g4781.t2 | PANTHER | PTHR11599:SF42 | PROTEASOME SUBUNIT BETA TYPE-7 | 8 | 172 | 0.0e+00 |
| 4 | g4781.t2 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 8 | 172 | 0.0e+00 |
| 1 | g4781.t2 | Pfam | PF00227 | Proteasome subunit | 4 | 128 | 0.0e+00 |
| 2 | g4781.t2 | Pfam | PF12465 | Proteasome beta subunits C terminal | 146 | 177 | 1.5e-06 |
| 5 | g4781.t2 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 4 | 137 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed