Gene loci information

Transcript annotation

  • This transcript has been annotated as E3 ubiquitin-protein ligase Smurf1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4791 g4791.t1 TSS g4791.t1 4983387 4983387
chr_2 g4791 g4791.t1 isoform g4791.t1 4983706 4992355
chr_2 g4791 g4791.t1 exon g4791.t1.exon1 4983706 4983748
chr_2 g4791 g4791.t1 cds g4791.t1.CDS1 4983706 4983748
chr_2 g4791 g4791.t1 exon g4791.t1.exon2 4983942 4983980
chr_2 g4791 g4791.t1 cds g4791.t1.CDS2 4983942 4983980
chr_2 g4791 g4791.t1 exon g4791.t1.exon3 4985422 4986708
chr_2 g4791 g4791.t1 cds g4791.t1.CDS3 4985422 4986708
chr_2 g4791 g4791.t1 exon g4791.t1.exon4 4986780 4986926
chr_2 g4791 g4791.t1 cds g4791.t1.CDS4 4986780 4986926
chr_2 g4791 g4791.t1 exon g4791.t1.exon5 4987055 4987190
chr_2 g4791 g4791.t1 cds g4791.t1.CDS5 4987055 4987190
chr_2 g4791 g4791.t1 exon g4791.t1.exon6 4987247 4987759
chr_2 g4791 g4791.t1 cds g4791.t1.CDS6 4987247 4987759
chr_2 g4791 g4791.t1 exon g4791.t1.exon7 4987818 4987978
chr_2 g4791 g4791.t1 cds g4791.t1.CDS7 4987818 4987978
chr_2 g4791 g4791.t1 exon g4791.t1.exon8 4988039 4988228
chr_2 g4791 g4791.t1 cds g4791.t1.CDS8 4988039 4988228
chr_2 g4791 g4791.t1 exon g4791.t1.exon9 4988281 4988480
chr_2 g4791 g4791.t1 cds g4791.t1.CDS9 4988281 4988480
chr_2 g4791 g4791.t1 exon g4791.t1.exon10 4988537 4988700
chr_2 g4791 g4791.t1 cds g4791.t1.CDS10 4988537 4988700
chr_2 g4791 g4791.t1 exon g4791.t1.exon11 4988769 4988865
chr_2 g4791 g4791.t1 cds g4791.t1.CDS11 4988769 4988865
chr_2 g4791 g4791.t1 exon g4791.t1.exon12 4988933 4989116
chr_2 g4791 g4791.t1 cds g4791.t1.CDS12 4988933 4989116
chr_2 g4791 g4791.t1 exon g4791.t1.exon13 4989842 4990785
chr_2 g4791 g4791.t1 cds g4791.t1.CDS13 4989842 4990785
chr_2 g4791 g4791.t1 exon g4791.t1.exon14 4990849 4990917
chr_2 g4791 g4791.t1 cds g4791.t1.CDS14 4990849 4990917
chr_2 g4791 g4791.t1 exon g4791.t1.exon15 4991429 4991536
chr_2 g4791 g4791.t1 cds g4791.t1.CDS15 4991429 4991536
chr_2 g4791 g4791.t1 exon g4791.t1.exon16 4991630 4991739
chr_2 g4791 g4791.t1 cds g4791.t1.CDS16 4991630 4991739
chr_2 g4791 g4791.t1 exon g4791.t1.exon17 4991809 4992138
chr_2 g4791 g4791.t1 cds g4791.t1.CDS17 4991809 4992138
chr_2 g4791 g4791.t1 exon g4791.t1.exon18 4992221 4992355
chr_2 g4791 g4791.t1 cds g4791.t1.CDS18 4992221 4992355
chr_2 g4791 g4791.t1 TTS g4791.t1 4992655 4992655

Sequences

>g4791.t1 Gene=g4791 Length=4857
ATGGATCGACGTAATGGAGCACACAGCAAAATTAGAATTACAATTCTTGGAGCAAGGAAT
CTCGCTCGAAAAGACTTGTTTAGACTTCCAGATCCATTTGCTAAAGTGATTGTAGATGGA
GGTCAAGTTTTTACAACGGACGCTTGTAAAGCTACTGTTGATCCAAAATGGAGCTCACAT
TATGATCTGTTTTTAGCAAGAGGCGATGGCATAACGATATCAATATGGAATCAGAAAAAA
GTTCTCAAAAATTCGTCTAGCGGCTTTATGGGTTGCGTTCGAATAACTTCATCTACAGTT
CAGCGACTAAAAGACACTGGATATCAAAGATTAGATTTGGGAAAAATTTCACCCGATGAT
CCGACACCCGTAAAGGGTCAAATAATTATTTCTCTTCTCTCTCGTGATGCTCTATCTGGT
GCAGGCAATCCAATTGCAATTGTTGGTCCAGCTGGAGAAGTGCATGGTCCAGATGAAGAT
GAAAATAATTCCACTACGACCACAACAACATCAAATAATTCTGAACAGAAAAATACTAGC
AATAATAATAATAATAATAATAATTCATCGAATCTACCGGAAGGTTGGGAAGAAAGAAAG
ACAGCCGATGGTAGGAGTTATTATGTAAATCACGTTTCTAGAACAACACAGTGGTCTCGT
CCAACTCAGCCTGCATCGGTGGCTGCTGTAGCAAATACAGGAAATGCATCACCACAAACA
CCTGTTACAACTAATGGACATCATCATCATCATGCTAGTGAATCGAATAATAACGTTAGC
AACAATACAAATAGTTCAAATAATCAAATTGCAGCCGGCCCATCACGTTCAGCAACGATG
AATAATATTGAGCAGAGCTCGTCTAATGGTAGTCTTAATATAGAGTCATTGACAACATCA
ACAAATCGCAGACATTCGACTGAAAATATCATTGGACAAACGACAAATACAAATGGAGAG
ATAAGCAATAGTTGTAGCACAAATAGTATTGAAAATAAAACTGCTTCATCTCCGACATCT
GGAAATAATACCACTGCTCTAAATTCCATTCATGTGCAAAATTTAACAACTCAGTTAGGC
TCTCTTGCAATCGAGACAAATTCGAATGATTCGACACAGCAGCAGCAGCAACAAACTCCA
CAACATTTAAATACACCAACAGTCGCAACAGCGACTAATACTAGGATTCTAAATAAATCG
ACCAATTTATCATCAACACAGCAACAACAAGTGCCTCCCAATATTACTGCCCCTATGAAC
TCCGAACGCAGCCGTTCACCACCGACGAATTTACGTAACGAAGACAATTCATTTAATAAT
ACGCCACAAAGATCAGCAGAAGTGATTCAAAATCGCAATGCGACTGATGCACAAAGAGCT
CGTCGTACTTCAAGGAGTCAAGATGAATCGCAAAGAAGACAACGACAAAGACAAGTGCGA
CAAGTTCCCACAATAATTGGTGCTGTACGACCGAATGCAACGACGCGACCTGCGATCGAT
TTACCTCCTGGTTATGAAATGAGAACAACACAACAAGGTCAAGTTTACTTTTTTCACATT
CCAACTGGCGTCTCAACATGGCACGATCCGAGAATTCCGCGTGATTTTGACATTCAAACA
CTGACAGCAGAGCAGTTGGGAGCCTTACCTAGTGGATGGGAGCAGAGGAAAACGGCAAGT
GGACGTGATTATTTTGTAAATCATAATAATAGAACAACACAATTCACTGATCCAAGACTG
AATGGTCAGGTGCTAAATGCATTGCGCAGATCAGTTGCTGCTCAAGCATCATCCGGTGCT
CAACCACAAGTTTCAAATGGACCGACTGCAATTATTAGAGCGAATGTCATTACTAACACA
GCTGTCACTAACAATTTATCTTCACCTTCATCTCAACAACATCAAACATCGTCACAACAA
GCAAATAGTACCACAACAACGACAACGGGAAGCAATGCAATTCCGAATTATTTACCTGTA
GAATTACTGGAAAGTGAACTGCCAAAATATCGAAGAGATTTAGTTGGGAAATTACGAGCA
TTGCGTTCAGAACTTCAAGCACTTCAACCACAATCTGGACATTGTCGTTTAGAAGTATCG
AGAACGGAAATTTTTGAAGAAAGTTATCGATTAGTAATGAAAATGCGACCAAAGGACATG
AGAAAACGACTGATGGTAAAATTTCGTAATGAAGAGGGTTTAGATTATGGTGGAATTGCA
CGAGAATGGCTTCATTTACTCTCTCGTGAAATGTTAAATCCGCAATATGGACTTTTTCAA
TACTCAAGAGACGATCAATATACATTGCAAATCAATCCAGATTCAAGTATTAATCCCGAT
CATCTCTCATACTTTCATTTTGTTGGAAGAATATTAGGAATTGCTGTTTTTCATGGACAT
TGTCTTGATGCCGGTTTCACTTTACCATTTTATAAGCAACTTTTAAATAAACCTATTACA
TTGCCAGATATCGAAGCTGTTGATCCCGAACTACATAGAAGTTTGACATGGATGCTTGAA
AATGATATCACAAATGTAATGTATTCAACATTCAGTGTTGAAAATAATAGTTTCGGTGTG
CTTAAAGTTCATGAATTAAAACCCAATGGAGCACAAATTATTGTCACTGAGGATAATAAA
CGAGAGTATGTTAAATTATATGTCAACTATCGATTCATGAGAGGGATTGAACAACAATTT
TTAGCACTACAAAAAGGTTTTTGTGAATTAATTCCTAATCAACTTTTACGACCGTTTGAT
GAACGTGAGCTTGAACTAGTGATTTGTGGCATAAGCAATATTGATGTTAATGATTGGAAG
CAATATACTCGTTTAAAGCACTGTTCACCAGAAACTCCACAAGTAATATGGTTTTGGCAG
GTTGTTGAATCATATACACCAGAAATGCGTGCAAGACTGTTACAATTTGTTACTGGCTCG
TCGCGTGTACCACTTCAAGGATTCAAAGCATTGCAAGGAAACACTGGCGCGGCTACTCCC
CGTCTCTTCACCATTCATCTCACACATGACGTTCCAATTCAAAATCTACCAAAAGCACAT
ACATGCTTCAATAGAATCGATCTACCGCCCTATGACAGTTATCAATTGCTTTATGATAAG
TTAAGTCAAGCCGTTGAGGAAACATGTGGATTTGCTGTAGATTATTACACAAATTTTTTT
AAAAATCTCAAACTCATTTATGATGATGAGCGATTTTTTGATGTTGAATTGCATTGTGAA
AGTAATGGAAAAGAGCAAAATATCATAAAAGCACATAGAATAGTATTATCAGCCTCAAGC
CGCTATTTTGATGCAATGTTTGGAAATGATTTCAATGAAAATAAGAATAAAATTGTTAAA
TTTCACTCTATAAGTTATTCGATATTGAAAGAATTAATTGGATTCATTTATACTGGAAAA
ATTGAAATAAATCAAGTAAATGTGCAAGAATTATTAGCAGCAGCTGATATGCTTCAATTG
ACAGAAGTAGTCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCT
TTAGGAATTCTGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTT
TCATTTATTAATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCA
TCACAAATGTTTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAA
GTATTTTCTGCAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTT
TTTGATATTTTGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGAA
ATTGCACAATGTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAAAAAGATTTA
ACACTCAGACGTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGAGCTAAAAAA
TCAATTTATGTGATTGGTGGATCAAAGAGAGAAAGCACATCAGGCTGGACAAATGATTGC
ATATTTGATAGTGTAATTAAATACGATATTTTTAGACGAGAATGGGTTGATGTTGCTCCT
ATGGCTGTTGGCAGAATTTTACCTGGTGTTACTGTATTAAATTCTAAAATTTTTGTTGTT
GGTGGCGAAAGAGGCTCTCAAATATTTGCAAATGGTGAAGTTTATGATCCAATAACTAAT
ACATGGGAAAATTTGCCTGCTATGATGACACCTCGATGTGAATTTGGTTTATGCTCTTTG
GGTGGAACAATATATGCGATAGGAGGATGGATTGGTGAAGATATAGGAGATAGCATAGAA
TGTTATGATCCAATAAGAAAATCCTGGCAAACTGTTGATAAATTACCAGAAGCAAGATTC
AGTATGGGATTGGTTTCATTTGAAGGACTCATATATATTGTTGGTGGTTGCACACAAAGT
AGCAGACATCTTCCAGATCTTATAAGTTACAATCCAGTAACAAAAGAATTTACACATTTA
TCAAAAATGCAGACAGCTCGCTGTCAAATGGGAGTAGCTATACTCGGAAGGCATCTTTAT
GTAGTAGGAGGCAACTCAAGTCATCAAGAAGTCCTTCAAAGTGTTGAAAAATATTCCTTT
GATGATGATAAATGGACTAGTGTGTCTCCCATGACAACGGCACGTGCCTCACCAGCAGTT
TCATCAGCTGATGGTGTTCTTTACGTCGCTGGCGGCGATCAGACATGTGAAGTCAACTTT
TATCGAGCACAAATCACAATAAATTCATTTGAATGTTATAATCCATTGACAGACACGTGG
AAGACCTGTCCATCATTACCGACGAGTAGAAGTGAAGCGGGCAGTGTTGTGATTTAA

>g4791.t1 Gene=g4791 Length=1618
MDRRNGAHSKIRITILGARNLARKDLFRLPDPFAKVIVDGGQVFTTDACKATVDPKWSSH
YDLFLARGDGITISIWNQKKVLKNSSSGFMGCVRITSSTVQRLKDTGYQRLDLGKISPDD
PTPVKGQIIISLLSRDALSGAGNPIAIVGPAGEVHGPDEDENNSTTTTTTSNNSEQKNTS
NNNNNNNNSSNLPEGWEERKTADGRSYYVNHVSRTTQWSRPTQPASVAAVANTGNASPQT
PVTTNGHHHHHASESNNNVSNNTNSSNNQIAAGPSRSATMNNIEQSSSNGSLNIESLTTS
TNRRHSTENIIGQTTNTNGEISNSCSTNSIENKTASSPTSGNNTTALNSIHVQNLTTQLG
SLAIETNSNDSTQQQQQQTPQHLNTPTVATATNTRILNKSTNLSSTQQQQVPPNITAPMN
SERSRSPPTNLRNEDNSFNNTPQRSAEVIQNRNATDAQRARRTSRSQDESQRRQRQRQVR
QVPTIIGAVRPNATTRPAIDLPPGYEMRTTQQGQVYFFHIPTGVSTWHDPRIPRDFDIQT
LTAEQLGALPSGWEQRKTASGRDYFVNHNNRTTQFTDPRLNGQVLNALRRSVAAQASSGA
QPQVSNGPTAIIRANVITNTAVTNNLSSPSSQQHQTSSQQANSTTTTTTGSNAIPNYLPV
ELLESELPKYRRDLVGKLRALRSELQALQPQSGHCRLEVSRTEIFEESYRLVMKMRPKDM
RKRLMVKFRNEEGLDYGGIAREWLHLLSREMLNPQYGLFQYSRDDQYTLQINPDSSINPD
HLSYFHFVGRILGIAVFHGHCLDAGFTLPFYKQLLNKPITLPDIEAVDPELHRSLTWMLE
NDITNVMYSTFSVENNSFGVLKVHELKPNGAQIIVTEDNKREYVKLYVNYRFMRGIEQQF
LALQKGFCELIPNQLLRPFDERELELVICGISNIDVNDWKQYTRLKHCSPETPQVIWFWQ
VVESYTPEMRARLLQFVTGSSRVPLQGFKALQGNTGAATPRLFTIHLTHDVPIQNLPKAH
TCFNRIDLPPYDSYQLLYDKLSQAVEETCGFAVDYYTNFFKNLKLIYDDERFFDVELHCE
SNGKEQNIIKAHRIVLSASSRYFDAMFGNDFNENKNKIVKFHSISYSILKELIGFIYTGK
IEINQVNVQELLAAADMLQLTEVVDGCSMYLCRELHPSNALGILRFAEAHNCKELAESAL
SFINSHFPEVAEQDEILEISSQMFSRLISSEMIRVDSEYQVFSAAMRWVKHEISNRKRFV
FDILANVRLSLVSMRLIEAEIAQCRDMSLKIALISLKKDLTLRRGQLVPVSANPRLGAKK
SIYVIGGSKRESTSGWTNDCIFDSVIKYDIFRREWVDVAPMAVGRILPGVTVLNSKIFVV
GGERGSQIFANGEVYDPITNTWENLPAMMTPRCEFGLCSLGGTIYAIGGWIGEDIGDSIE
CYDPIRKSWQTVDKLPEARFSMGLVSFEGLIYIVGGCTQSSRHLPDLISYNPVTKEFTHL
SKMQTARCQMGVAILGRHLYVVGGNSSHQEVLQSVEKYSFDDDKWTSVSPMTTARASPAV
SSADGVLYVAGGDQTCEVNFYRAQITINSFECYNPLTDTWKTCPSLPTSRSEAGSVVI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
34 g4791.t1 CDD cd08382 C2_Smurf-like 10 132 1.97362E-52
37 g4791.t1 CDD cd00201 WW 193 222 8.77105E-13
36 g4791.t1 CDD cd00201 WW 502 532 3.24221E-8
35 g4791.t1 CDD cd00201 WW 550 580 1.29892E-11
38 g4791.t1 CDD cd00078 HECTc 695 1051 1.27481E-154
33 g4791.t1 Gene3D G3DSA:2.60.40.150 - 7 135 2.7E-25
30 g4791.t1 Gene3D G3DSA:2.20.70.10 - 187 231 2.6E-15
32 g4791.t1 Gene3D G3DSA:2.20.70.10 - 489 535 1.1E-10
31 g4791.t1 Gene3D G3DSA:2.20.70.10 - 540 580 2.7E-16
22 g4791.t1 Gene3D G3DSA:3.90.1750.10 Hect 643 928 1.5E-117
29 g4791.t1 Gene3D G3DSA:3.30.2160.10 Hect 818 895 1.5E-117
23 g4791.t1 Gene3D G3DSA:3.30.2410.10 Hect 931 1049 4.9E-43
28 g4791.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 1050 1176 1.9E-35
24 g4791.t1 Gene3D G3DSA:1.25.40.420 - 1177 1290 1.1E-30
25 g4791.t1 Gene3D G3DSA:2.120.10.80 - 1312 1433 1.4E-32
26 g4791.t1 Gene3D G3DSA:2.120.10.80 - 1434 1583 1.9E-42
27 g4791.t1 Gene3D G3DSA:2.120.10.80 - 1584 1618 7.5E-6
57 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 149 194 -
58 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 161 194 -
56 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 241 261 -
54 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 285 322 -
55 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 401 481 -
61 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 401 457 -
59 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 458 476 -
60 g4791.t1 MobiDBLite mobidb-lite consensus disorder prediction 625 652 -
13 g4791.t1 PANTHER PTHR11254:SF395 E3 UBIQUITIN-PROTEIN LIGASE SMURF1 9 1054 0.0
14 g4791.t1 PANTHER PTHR11254 HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 9 1054 0.0
7 g4791.t1 Pfam PF00168 C2 domain 10 101 2.5E-12
10 g4791.t1 Pfam PF00397 WW domain 192 221 1.7E-11
11 g4791.t1 Pfam PF00397 WW domain 501 530 2.2E-6
9 g4791.t1 Pfam PF00397 WW domain 549 578 2.0E-7
12 g4791.t1 Pfam PF00632 HECT-domain (ubiquitin-transferase) 746 1053 4.2E-102
8 g4791.t1 Pfam PF00651 BTB/POZ domain 1068 1174 3.1E-24
1 g4791.t1 Pfam PF07707 BTB And C-terminal Kelch 1181 1278 3.0E-27
4 g4791.t1 Pfam PF01344 Kelch motif 1365 1409 2.5E-11
3 g4791.t1 Pfam PF01344 Kelch motif 1411 1452 4.5E-10
2 g4791.t1 Pfam PF01344 Kelch motif 1459 1504 1.6E-5
6 g4791.t1 Pfam PF01344 Kelch motif 1506 1551 2.9E-10
5 g4791.t1 Pfam PF01344 Kelch motif 1554 1607 5.8E-8
39 g4791.t1 ProSitePatterns PS01159 WW/rsp5/WWP domain signature. 196 221 -
40 g4791.t1 ProSitePatterns PS01159 WW/rsp5/WWP domain signature. 553 578 -
62 g4791.t1 ProSiteProfiles PS50004 C2 domain profile. 9 94 10.264
65 g4791.t1 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 190 223 17.811
64 g4791.t1 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 499 532 11.704
66 g4791.t1 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 547 580 15.742
67 g4791.t1 ProSiteProfiles PS50237 HECT domain profile. 716 1054 106.403
63 g4791.t1 ProSiteProfiles PS50097 BTB domain profile. 1073 1145 19.051
41 g4791.t1 SMART SM00239 C2_3c 10 112 7.2E-9
44 g4791.t1 SMART SM00456 ww_5 191 223 1.2E-13
45 g4791.t1 SMART SM00456 ww_5 500 532 3.1E-7
43 g4791.t1 SMART SM00456 ww_5 548 580 2.0E-12
42 g4791.t1 SMART SM00119 hect_3 714 1052 1.0E-152
46 g4791.t1 SMART SM00225 BTB_4 1073 1175 8.3E-21
47 g4791.t1 SMART SM00875 BACK_2 1180 1282 1.7E-27
49 g4791.t1 SMART SM00612 kelc_smart 1321 1375 0.0077
51 g4791.t1 SMART SM00612 kelc_smart 1376 1422 1.5E-13
48 g4791.t1 SMART SM00612 kelc_smart 1423 1469 1.1E-10
52 g4791.t1 SMART SM00612 kelc_smart 1470 1517 1.1E-4
53 g4791.t1 SMART SM00612 kelc_smart 1518 1565 7.7E-12
50 g4791.t1 SMART SM00612 kelc_smart 1566 1618 8.7E-4
16 g4791.t1 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 10 132 1.41E-18
18 g4791.t1 SUPERFAMILY SSF51045 WW domain 187 224 1.27E-12
17 g4791.t1 SUPERFAMILY SSF51045 WW domain 494 534 2.92E-10
19 g4791.t1 SUPERFAMILY SSF51045 WW domain 542 580 2.4E-11
15 g4791.t1 SUPERFAMILY SSF56204 Hect, E3 ligase catalytic domain 685 1047 1.57E-123
21 g4791.t1 SUPERFAMILY SSF54695 POZ domain 1055 1173 2.67E-28
20 g4791.t1 SUPERFAMILY SSF50965 Galactose oxidase, central domain 1394 1618 7.72E-45

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0004842 ubiquitin-protein transferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values