General information for g4791.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-binding protein IPP.
Parent gene
- The parent gene g4791 is located on chr_2: 4991936..4992659 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4791 | g4791.t10 | TSS | g4791.t10 | 4989523 | 4989523 |
| chr_2 | g4791 | g4791.t10 | isoform | g4791.t10 | 4990161 | 4992659 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon1 | 4990161 | 4990773 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS1 | 4990185 | 4990773 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon2 | 4990849 | 4990917 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS2 | 4990849 | 4990917 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon3 | 4991429 | 4991536 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS3 | 4991429 | 4991536 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon4 | 4991630 | 4991739 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS4 | 4991630 | 4991739 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon5 | 4991809 | 4992138 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS5 | 4991809 | 4992138 |
| chr_2 | g4791 | g4791.t10 | exon | g4791.t10.exon6 | 4992221 | 4992659 |
| chr_2 | g4791 | g4791.t10 | cds | g4791.t10.CDS6 | 4992221 | 4992355 |
| chr_2 | g4791 | g4791.t10 | TTS | g4791.t10 | 4992655 | 4992655 |
Sequences
>g4791.t10 Gene=g4791 Length=1669
ACAGAAGTAGTCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCT
TTAGGAATTCTGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTT
TCATTTATTAATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCA
TCACAAATGTTTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAA
GTATTTTCTGCAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTT
TTTGATATTTTGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGAA
ATTGCACAATGTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAAAAAGATTTA
ACACTCAGACGTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGAGCTAAAAAA
TCAATTTATGTGATTGGTGGATCAAAGAGAGAAAGCACATCAGGCTGGACAAATGATTGC
ATATTTGATAGTGTAATTAAATACGATATTTTTAGACGAGAATGGGTTGATGTTGCTCCT
ATGGCTGTTGGCAGTGTTACTGTATTAAATTCTAAAATTTTTGTTGTTGGTGGCGAAAGA
GGCTCTCAAATATTTGCAAATGGTGAAGTTTATGATCCAATAACTAATACATGGGAAAAT
TTGCCTGCTATGATGACACCTCGATGTGAATTTGGTTTATGCTCTTTGGGTGGAACAATA
TATGCGATAGGAGGATGGATTGGTGAAGATATAGGAGATAGCATAGAATGTTATGATCCA
ATAAGAAAATCCTGGCAAACTGTTGATAAATTACCAGAAGCAAGATTCAGTATGGGATTG
GTTTCATTTGAAGGACTCATATATATTGTTGGTGGTTGCACACAAAGTAGCAGACATCTT
CCAGATCTTATAAGTTACAATCCAGTAACAAAAGAATTTACACATTTATCAAAAATGCAG
ACAGCTCGCTGTCAAATGGGAGTAGCTATACTCGGAAGGCATCTTTATGTAGTAGGAGGC
AACTCAAGTCATCAAGAAGTCCTTCAAAGTGTTGAAAAATATTCCTTTGATGATGATAAA
TGGACTAGTGTGTCTCCCATGACAACGGCACGTGCCTCACCAGCAGTTTCATCAGCTGAT
GGTGTTCTTTACGTCGCTGGCGGCGATCAGACATGTGAAGTCAACTTTTATCGAGCACAA
ATCACAATAAATTCATTTGAATGTTATAATCCATTGACAGACACGTGGAAGACCTGTCCA
TCATTACCGACGAGTAGAAGTGAAGCGGGCAGTGTTGTGATTTAAAAAATTATGCATGTA
ACCAATACTCATCATTAAAAATTTTTTTTATTTCATCACACATTAATAAAAAGTATTACG
ATATCATTCAATTAAATTTTAATTGAATTAAAGAAAATTTTAATTAATTATATTCACACA
GAAATATGTATCTATGTTCCTATACACAAAGCATTTTAAAAGCTTCACTTATTAATTAAT
TATCTTGCATTTTAAGCTAACCAATTAAATTATGCTTAATAAATGACATGTTTTTTGTAG
CATGTTGAAAAGTCCAAATAAAAATATTTATGAAATTTTTCTCAGAAAA
>g4791.t10 Gene=g4791 Length=446
MYLCRELHPSNALGILRFAEAHNCKELAESALSFINSHFPEVAEQDEILEISSQMFSRLI
SSEMIRVDSEYQVFSAAMRWVKHEISNRKRFVFDILANVRLSLVSMRLIEAEIAQCRDMS
LKIALISLKKDLTLRRGQLVPVSANPRLGAKKSIYVIGGSKRESTSGWTNDCIFDSVIKY
DIFRREWVDVAPMAVGSVTVLNSKIFVVGGERGSQIFANGEVYDPITNTWENLPAMMTPR
CEFGLCSLGGTIYAIGGWIGEDIGDSIECYDPIRKSWQTVDKLPEARFSMGLVSFEGLIY
IVGGCTQSSRHLPDLISYNPVTKEFTHLSKMQTARCQMGVAILGRHLYVVGGNSSHQEVL
QSVEKYSFDDDKWTSVSPMTTARASPAVSSADGVLYVAGGDQTCEVNFYRAQITINSFEC
YNPLTDTWKTCPSLPTSRSEAGSVVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 20 | g4791.t10 | Gene3D | G3DSA:1.25.40.420 | - | 7 | 122 | 0.0e+00 |
| 23 | g4791.t10 | Gene3D | G3DSA:2.120.10.80 | - | 141 | 260 | 0.0e+00 |
| 21 | g4791.t10 | Gene3D | G3DSA:2.120.10.80 | - | 261 | 410 | 0.0e+00 |
| 22 | g4791.t10 | Gene3D | G3DSA:2.120.10.80 | - | 411 | 446 | 1.7e-06 |
| 7 | g4791.t10 | PANTHER | PTHR24412 | KELCH PROTEIN | 5 | 442 | 0.0e+00 |
| 8 | g4791.t10 | PANTHER | PTHR24412:SF35 | ACTIN-BINDING PROTEIN IPP | 5 | 442 | 0.0e+00 |
| 11 | g4791.t10 | PRINTS | PR00501 | Kelch repeat signature | 202 | 215 | 4.3e-05 |
| 9 | g4791.t10 | PRINTS | PR00501 | Kelch repeat signature | 219 | 233 | 4.3e-05 |
| 10 | g4791.t10 | PRINTS | PR00501 | Kelch repeat signature | 234 | 246 | 4.3e-05 |
| 1 | g4791.t10 | Pfam | PF07707 | BTB And C-terminal Kelch | 13 | 110 | 0.0e+00 |
| 5 | g4791.t10 | Pfam | PF01344 | Kelch motif | 197 | 237 | 0.0e+00 |
| 3 | g4791.t10 | Pfam | PF01344 | Kelch motif | 239 | 280 | 0.0e+00 |
| 2 | g4791.t10 | Pfam | PF01344 | Kelch motif | 287 | 332 | 3.4e-06 |
| 6 | g4791.t10 | Pfam | PF01344 | Kelch motif | 334 | 379 | 0.0e+00 |
| 4 | g4791.t10 | Pfam | PF01344 | Kelch motif | 382 | 435 | 0.0e+00 |
| 13 | g4791.t10 | SMART | SM00875 | BACK_2 | 12 | 114 | 0.0e+00 |
| 14 | g4791.t10 | SMART | SM00612 | kelc_smart | 153 | 203 | 9.5e-01 |
| 19 | g4791.t10 | SMART | SM00612 | kelc_smart | 204 | 250 | 0.0e+00 |
| 17 | g4791.t10 | SMART | SM00612 | kelc_smart | 251 | 297 | 0.0e+00 |
| 18 | g4791.t10 | SMART | SM00612 | kelc_smart | 298 | 345 | 1.1e-04 |
| 15 | g4791.t10 | SMART | SM00612 | kelc_smart | 346 | 393 | 0.0e+00 |
| 16 | g4791.t10 | SMART | SM00612 | kelc_smart | 394 | 446 | 8.7e-04 |
| 12 | g4791.t10 | SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 222 | 446 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed