Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Actin-binding protein IPP.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4791 g4791.t11 TSS g4791.t11 4989523 4989523
chr_2 g4791 g4791.t11 isoform g4791.t11 4990512 4992355
chr_2 g4791 g4791.t11 exon g4791.t11.exon1 4990512 4990785
chr_2 g4791 g4791.t11 cds g4791.t11.CDS1 4990539 4990785
chr_2 g4791 g4791.t11 exon g4791.t11.exon2 4990849 4990917
chr_2 g4791 g4791.t11 cds g4791.t11.CDS2 4990849 4990917
chr_2 g4791 g4791.t11 exon g4791.t11.exon3 4991429 4991540
chr_2 g4791 g4791.t11 cds g4791.t11.CDS3 4991429 4991540
chr_2 g4791 g4791.t11 exon g4791.t11.exon4 4991630 4991739
chr_2 g4791 g4791.t11 cds g4791.t11.CDS4 4991630 4991645
chr_2 g4791 g4791.t11 exon g4791.t11.exon5 4991809 4992138
chr_2 g4791 g4791.t11 exon g4791.t11.exon6 4992221 4992355
chr_2 g4791 g4791.t11 TTS g4791.t11 4992655 4992655

Sequences

>g4791.t11 Gene=g4791 Length=1030
GAAGCTGAAATTGCACAATGTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAA
AAAGATTTAACACTCAGACGTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGA
GCTAAAAAATCAATTTATGTGATTGGTGGATCAAAGAGAGAAAGCACATCAGGCTGGACA
AATGATTGCATATTTGATAGTGTAATTAAATACGATATTTTTAGACGAGAATGGGTTGAT
GTTGCTCCTATGGCTGTTGGCAGAATTTTACCTGGTGTTACTGTATTAAATTCTAAAATT
TTTGTTGTTGGTGGCGAAAGAGGCTCTCAAATATTTGCAAATGGTGAAGTTTATGATCCA
ATAACTAATACATGGGAAAATTTGCCTGCTATGATGACACCTCGATGTGAATTTGGTTTA
TGCTCTTTGGGTGGAACAATATATGCGATAGGCAAGAGGATGGATTGGTGAAGATATAGG
AGATAGCATAGAATGTTATGATCCAATAAGAAAATCCTGGCAAACTGTTGATAAATTACC
AGAAGCAAGATTCAGTATGGGATTGGTTTCATTTGAAGGACTCATATATATTGTTGGTGG
TTGCACACAAAGTAGCAGACATCTTCCAGATCTTATAAGTTACAATCCAGTAACAAAAGA
ATTTACACATTTATCAAAAATGCAGACAGCTCGCTGTCAAATGGGAGTAGCTATACTCGG
AAGGCATCTTTATGTAGTAGGAGGCAACTCAAGTCATCAAGAAGTCCTTCAAAGTGTTGA
AAAATATTCCTTTGATGATGATAAATGGACTAGTGTGTCTCCCATGACAACGGCACGTGC
CTCACCAGCAGTTTCATCAGCTGATGGTGTTCTTTACGTCGCTGGCGGCGATCAGACATG
TGAAGTCAACTTTTATCGAGCACAAATCACAATAAATTCATTTGAATGTTATAATCCATT
GACAGACACGTGGAAGACCTGTCCATCATTACCGACGAGTAGAAGTGAAGCGGGCAGTGT
TGTGATTTAA

>g4791.t11 Gene=g4791 Length=147
MSLKIALISLKKDLTLRRGQLVPVSANPRLGAKKSIYVIGGSKRESTSGWTNDCIFDSVI
KYDIFRREWVDVAPMAVGRILPGVTVLNSKIFVVGGERGSQIFANGEVYDPITNTWENLP
AMMTPRCEFGLCSLGGTIYAIGKRMDW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g4791.t11 Gene3D G3DSA:2.120.10.80 - 22 146 0.0e+00
2 g4791.t11 PANTHER PTHR24412 KELCH PROTEIN 33 142 0.0e+00
3 g4791.t11 PANTHER PTHR24412:SF210 KELCH-LIKE PROTEIN 18 33 142 0.0e+00
5 g4791.t11 PRINTS PR00501 Kelch repeat signature 88 101 3.2e-06
6 g4791.t11 PRINTS PR00501 Kelch repeat signature 105 119 3.2e-06
4 g4791.t11 PRINTS PR00501 Kelch repeat signature 120 132 3.2e-06
1 g4791.t11 Pfam PF01344 Kelch motif 79 123 0.0e+00
8 g4791.t11 SMART SM00612 kelc_smart 35 89 7.7e-03
9 g4791.t11 SMART SM00612 kelc_smart 90 136 0.0e+00
7 g4791.t11 SUPERFAMILY SSF117281 Kelch motif 34 142 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values