General information for g4791.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Actin-binding protein IPP.
Parent gene
- The parent gene g4791 is located on chr_2: 4991936..4992659 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4791 | g4791.t12 | isoform | g4791.t12 | 4990849 | 4992659 |
| chr_2 | g4791 | g4791.t12 | exon | g4791.t12.exon1 | 4990849 | 4990921 |
| chr_2 | g4791 | g4791.t12 | exon | g4791.t12.exon2 | 4991452 | 4991536 |
| chr_2 | g4791 | g4791.t12 | cds | g4791.t12.CDS1 | 4991476 | 4991536 |
| chr_2 | g4791 | g4791.t12 | exon | g4791.t12.exon3 | 4991630 | 4991739 |
| chr_2 | g4791 | g4791.t12 | cds | g4791.t12.CDS2 | 4991630 | 4991739 |
| chr_2 | g4791 | g4791.t12 | exon | g4791.t12.exon4 | 4991809 | 4992138 |
| chr_2 | g4791 | g4791.t12 | cds | g4791.t12.CDS3 | 4991809 | 4992138 |
| chr_2 | g4791 | g4791.t12 | exon | g4791.t12.exon5 | 4992221 | 4992659 |
| chr_2 | g4791 | g4791.t12 | cds | g4791.t12.CDS4 | 4992221 | 4992355 |
| chr_2 | g4791 | g4791.t12 | TTS | g4791.t12 | 4992655 | 4992655 |
| chr_2 | g4791 | g4791.t12 | TSS | g4791.t12 | NA | NA |
Sequences
>g4791.t12 Gene=g4791 Length=1037
GTGTTACTGTATTAAATTCTAAAATTTTTGTTGTTGGTGGCGAAAGAGGCTCTCAAATAT
TTGCAAATGGTGAAATACATGGGAAAATTTGCCTGCTATGATGACACCTCGATGTGAATT
TGGTTTATGCTCTTTGGGTGGAACAATATATGCGATAGGAGGATGGATTGGTGAAGATAT
AGGAGATAGCATAGAATGTTATGATCCAATAAGAAAATCCTGGCAAACTGTTGATAAATT
ACCAGAAGCAAGATTCAGTATGGGATTGGTTTCATTTGAAGGACTCATATATATTGTTGG
TGGTTGCACACAAAGTAGCAGACATCTTCCAGATCTTATAAGTTACAATCCAGTAACAAA
AGAATTTACACATTTATCAAAAATGCAGACAGCTCGCTGTCAAATGGGAGTAGCTATACT
CGGAAGGCATCTTTATGTAGTAGGAGGCAACTCAAGTCATCAAGAAGTCCTTCAAAGTGT
TGAAAAATATTCCTTTGATGATGATAAATGGACTAGTGTGTCTCCCATGACAACGGCACG
TGCCTCACCAGCAGTTTCATCAGCTGATGGTGTTCTTTACGTCGCTGGCGGCGATCAGAC
ATGTGAAGTCAACTTTTATCGAGCACAAATCACAATAAATTCATTTGAATGTTATAATCC
ATTGACAGACACGTGGAAGACCTGTCCATCATTACCGACGAGTAGAAGTGAAGCGGGCAG
TGTTGTGATTTAAAAAATTATGCATGTAACCAATACTCATCATTAAAAATTTTTTTTATT
TCATCACACATTAATAAAAAGTATTACGATATCATTCAATTAAATTTTAATTGAATTAAA
GAAAATTTTAATTAATTATATTCACACAGAAATATGTATCTATGTTCCTATACACAAAGC
ATTTTAAAAGCTTCACTTATTAATTAATTATCTTGCATTTTAAGCTAACCAATTAAATTA
TGCTTAATAAATGACATGTTTTTTGTAGCATGTTGAAAAGTCCAAATAAAAATATTTATG
AAATTTTTCTCAGAAAA
>g4791.t12 Gene=g4791 Length=211
MMTPRCEFGLCSLGGTIYAIGGWIGEDIGDSIECYDPIRKSWQTVDKLPEARFSMGLVSF
EGLIYIVGGCTQSSRHLPDLISYNPVTKEFTHLSKMQTARCQMGVAILGRHLYVVGGNSS
HQEVLQSVEKYSFDDDKWTSVSPMTTARASPAVSSADGVLYVAGGDQTCEVNFYRAQITI
NSFECYNPLTDTWKTCPSLPTSRSEAGSVVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g4791.t12 | Gene3D | G3DSA:2.120.10.80 | - | 1 | 176 | 0.0e+00 |
| 15 | g4791.t12 | Gene3D | G3DSA:2.120.10.80 | - | 177 | 211 | 6.0e-07 |
| 5 | g4791.t12 | PANTHER | PTHR45632 | LD33804P | 1 | 141 | 0.0e+00 |
| 6 | g4791.t12 | PANTHER | PTHR45632 | LD33804P | 64 | 207 | 0.0e+00 |
| 8 | g4791.t12 | PRINTS | PR00501 | Kelch repeat signature | 61 | 74 | 2.7e-05 |
| 9 | g4791.t12 | PRINTS | PR00501 | Kelch repeat signature | 127 | 141 | 2.7e-05 |
| 7 | g4791.t12 | PRINTS | PR00501 | Kelch repeat signature | 197 | 209 | 2.7e-05 |
| 1 | g4791.t12 | Pfam | PF01344 | Kelch motif | 4 | 45 | 0.0e+00 |
| 2 | g4791.t12 | Pfam | PF01344 | Kelch motif | 52 | 97 | 1.1e-06 |
| 3 | g4791.t12 | Pfam | PF01344 | Kelch motif | 99 | 144 | 0.0e+00 |
| 4 | g4791.t12 | Pfam | PF01344 | Kelch motif | 147 | 200 | 0.0e+00 |
| 11 | g4791.t12 | SMART | SM00612 | kelc_smart | 16 | 62 | 0.0e+00 |
| 13 | g4791.t12 | SMART | SM00612 | kelc_smart | 63 | 110 | 1.1e-04 |
| 12 | g4791.t12 | SMART | SM00612 | kelc_smart | 111 | 158 | 0.0e+00 |
| 14 | g4791.t12 | SMART | SM00612 | kelc_smart | 159 | 211 | 8.7e-04 |
| 10 | g4791.t12 | SUPERFAMILY | SSF117281 | Kelch motif | 2 | 210 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
