General information for g4791.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Actin-binding protein IPP.
Parent gene
- The parent gene g4791 is located on chr_2: 4991936..4992659 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4791 | g4791.t14 | TSS | g4791.t14 | 4991262 | 4991262 |
| chr_2 | g4791 | g4791.t14 | isoform | g4791.t14 | 4991734 | 4992659 |
| chr_2 | g4791 | g4791.t14 | exon | g4791.t14.exon1 | 4991734 | 4991739 |
| chr_2 | g4791 | g4791.t14 | exon | g4791.t14.exon2 | 4991809 | 4992138 |
| chr_2 | g4791 | g4791.t14 | cds | g4791.t14.CDS1 | 4991923 | 4992138 |
| chr_2 | g4791 | g4791.t14 | exon | g4791.t14.exon3 | 4992221 | 4992659 |
| chr_2 | g4791 | g4791.t14 | cds | g4791.t14.CDS2 | 4992221 | 4992355 |
| chr_2 | g4791 | g4791.t14 | TTS | g4791.t14 | 4992655 | 4992655 |
Sequences
>g4791.t14 Gene=g4791 Length=775
GGATTGGTTTCATTTGAAGGACTCATATATATTGTTGGTGGTTGCACACAAAGTAGCAGA
CATCTTCCAGATCTTATAAGTTACAATCCAGTAACAAAAGAATTTACACATTTATCAAAA
ATGCAGACAGCTCGCTGTCAAATGGGAGTAGCTATACTCGGAAGGCATCTTTATGTAGTA
GGAGGCAACTCAAGTCATCAAGAAGTCCTTCAAAGTGTTGAAAAATATTCCTTTGATGAT
GATAAATGGACTAGTGTGTCTCCCATGACAACGGCACGTGCCTCACCAGCAGTTTCATCA
GCTGATGGTGTTCTTTACGTCGCTGGCGGCGATCAGACATGTGAAGTCAACTTTTATCGA
GCACAAATCACAATAAATTCATTTGAATGTTATAATCCATTGACAGACACGTGGAAGACC
TGTCCATCATTACCGACGAGTAGAAGTGAAGCGGGCAGTGTTGTGATTTAAAAAATTATG
CATGTAACCAATACTCATCATTAAAAATTTTTTTTATTTCATCACACATTAATAAAAAGT
ATTACGATATCATTCAATTAAATTTTAATTGAATTAAAGAAAATTTTAATTAATTATATT
CACACAGAAATATGTATCTATGTTCCTATACACAAAGCATTTTAAAAGCTTCACTTATTA
ATTAATTATCTTGCATTTTAAGCTAACCAATTAAATTATGCTTAATAAATGACATGTTTT
TTGTAGCATGTTGAAAAGTCCAAATAAAAATATTTATGAAATTTTTCTCAGAAAA
>g4791.t14 Gene=g4791 Length=116
MQTARCQMGVAILGRHLYVVGGNSSHQEVLQSVEKYSFDDDKWTSVSPMTTARASPAVSS
ADGVLYVAGGDQTCEVNFYRAQITINSFECYNPLTDTWKTCPSLPTSRSEAGSVVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4791.t14 | Gene3D | G3DSA:2.120.10.80 | - | 1 | 116 | 0.00000 |
| 3 | g4791.t14 | PANTHER | PTHR24412 | KELCH PROTEIN | 1 | 115 | 0.00000 |
| 4 | g4791.t14 | PANTHER | PTHR24412:SF210 | KELCH-LIKE PROTEIN 18 | 1 | 115 | 0.00000 |
| 2 | g4791.t14 | Pfam | PF01344 | Kelch motif | 4 | 49 | 0.00000 |
| 1 | g4791.t14 | Pfam | PF01344 | Kelch motif | 52 | 105 | 0.00000 |
| 7 | g4791.t14 | SMART | SM00612 | kelc_smart | 16 | 63 | 0.00000 |
| 6 | g4791.t14 | SMART | SM00612 | kelc_smart | 64 | 116 | 0.00087 |
| 5 | g4791.t14 | SUPERFAMILY | SSF117281 | Kelch motif | 1 | 116 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
