General information for g4791.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kelch-like protein 12.
Parent gene
- The parent gene g4791 is located on chr_2: 4991936..4992659 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4791 | g4791.t5 | isoform | g4791.t5 | 4989511 | 4990684 |
| chr_2 | g4791 | g4791.t5 | exon | g4791.t5.exon1 | 4989511 | 4990684 |
| chr_2 | g4791 | g4791.t5 | TSS | g4791.t5 | 4989523 | 4989523 |
| chr_2 | g4791 | g4791.t5 | cds | g4791.t5.CDS1 | 4989996 | 4990682 |
| chr_2 | g4791 | g4791.t5 | TTS | g4791.t5 | NA | NA |
Sequences
>g4791.t5 Gene=g4791 Length=1174
GAGGTACAACTTTAGTTTTTGTTGATTGAAGAAAATTTTTGATAAAAAAAAAACAATTTT
TTTTATTTTAATCACTTGCGATTTGATAATTTGTCTAGTATTATTGATAAAACAGTATTT
AAAGTGAACAACTCTAATATGATATAATTAAAACATGACATAAAAACCAAAAAGTGATGA
TAAATGATATTGAGAAAAAGTGGGGAGTTGTCTGTATAGAAAATATTTTCATTGTGCAAA
ATTAAAAATTAAAAGAAATGCCACAAAACGAGTAGAATACAAATACTATTGTTTCAACAC
CAGAATCGCCTCTCATCAGTCTATCAAATAGTTATTACACAAATTTTTTTAAAAATCTCA
AACTCATTTATGATGATGAGCGATTTTTTGATGTTGAATTGCATTGTGAAAGTAATGGAA
AAGAGCAAAATATCATAAAAGCACATAGAATAGTATTATCAGCCTCAAGCCGCTATTTTG
ATGCAATGTTTGGAAATGATTTCAATGAAAATAAGAATAAAATTGTTAAATTTCACTCTA
TAAGTTATTCGATATTGAAAGAATTAATTGGATTCATTTATACTGGAAAAATTGAAATAA
ATCAAGTAAATGTGCAAGAATTATTAGCAGCAGCTGATATGCTTCAATTGACAGAAGTAG
TCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCTTTAGGAATTC
TGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTTTCATTTATTA
ATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCATCACAAATGT
TTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAAGTATTTTCTG
CAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTTTTTGATATTT
TGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGAAATTGCACAAT
GTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAAAAAGATTTAACACTCAGAC
GTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGAGCTAAAAAATCAATTTATG
TGATTGGTGGATCAAAGAGAGAAAGCACATCAGG
>g4791.t5 Gene=g4791 Length=229
MFGNDFNENKNKIVKFHSISYSILKELIGFIYTGKIEINQVNVQELLAAADMLQLTEVVD
GCSMYLCRELHPSNALGILRFAEAHNCKELAESALSFINSHFPEVAEQDEILEISSQMFS
RLISSEMIRVDSEYQVFSAAMRWVKHEISNRKRFVFDILANVRLSLVSMRLIEAEIAQCR
DMSLKIALISLKKDLTLRRGQLVPVSANPRLGAKKSIYVIGGSKRESTS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4791.t5 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 71 | 0.000 |
| 7 | g4791.t5 | Gene3D | G3DSA:1.25.40.420 | - | 72 | 186 | 0.000 |
| 3 | g4791.t5 | PANTHER | PTHR24412 | KELCH PROTEIN | 1 | 225 | 0.000 |
| 4 | g4791.t5 | PANTHER | PTHR24412:SF401 | FI11917P | 1 | 225 | 0.000 |
| 2 | g4791.t5 | Pfam | PF00651 | BTB/POZ domain | 1 | 69 | 0.000 |
| 1 | g4791.t5 | Pfam | PF07707 | BTB And C-terminal Kelch | 76 | 173 | 0.000 |
| 9 | g4791.t5 | ProSiteProfiles | PS50097 | BTB domain profile. | 1 | 40 | 9.889 |
| 6 | g4791.t5 | SMART | SM00875 | BACK_2 | 75 | 177 | 0.000 |
| 5 | g4791.t5 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 68 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed