Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Kelch-like protein 17.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4791 g4791.t6 isoform g4791.t6 4989511 4990916
chr_2 g4791 g4791.t6 exon g4791.t6.exon1 4989511 4990515
chr_2 g4791 g4791.t6 TSS g4791.t6 4989523 4989523
chr_2 g4791 g4791.t6 cds g4791.t6.CDS1 4989996 4990515
chr_2 g4791 g4791.t6 exon g4791.t6.exon2 4990783 4990916
chr_2 g4791 g4791.t6 cds g4791.t6.CDS2 4990783 4990796
chr_2 g4791 g4791.t6 TTS g4791.t6 NA NA

Sequences

>g4791.t6 Gene=g4791 Length=1139
GAGGTACAACTTTAGTTTTTGTTGATTGAAGAAAATTTTTGATAAAAAAAAAACAATTTT
TTTTATTTTAATCACTTGCGATTTGATAATTTGTCTAGTATTATTGATAAAACAGTATTT
AAAGTGAACAACTCTAATATGATATAATTAAAACATGACATAAAAACCAAAAAGTGATGA
TAAATGATATTGAGAAAAAGTGGGGAGTTGTCTGTATAGAAAATATTTTCATTGTGCAAA
ATTAAAAATTAAAAGAAATGCCACAAAACGAGTAGAATACAAATACTATTGTTTCAACAC
CAGAATCGCCTCTCATCAGTCTATCAAATAGTTATTACACAAATTTTTTTAAAAATCTCA
AACTCATTTATGATGATGAGCGATTTTTTGATGTTGAATTGCATTGTGAAAGTAATGGAA
AAGAGCAAAATATCATAAAAGCACATAGAATAGTATTATCAGCCTCAAGCCGCTATTTTG
ATGCAATGTTTGGAAATGATTTCAATGAAAATAAGAATAAAATTGTTAAATTTCACTCTA
TAAGTTATTCGATATTGAAAGAATTAATTGGATTCATTTATACTGGAAAAATTGAAATAA
ATCAAGTAAATGTGCAAGAATTATTAGCAGCAGCTGATATGCTTCAATTGACAGAAGTAG
TCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCTTTAGGAATTC
TGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTTTCATTTATTA
ATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCATCACAAATGT
TTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAAGTATTTTCTG
CAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTTTTTGATATTT
TGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGGTATACAATAGA
ATACTCTTCTTAATCATCTTCATTACGCTTATTTTCCTTTTTCTTTTCAAGGTGTTACTG
TATTAAATTCTAAAATTTTTGTTGTTGGTGGCGAAAGAGGCTCTCAAATATTTGCAAAT

>g4791.t6 Gene=g4791 Length=177
MFGNDFNENKNKIVKFHSISYSILKELIGFIYTGKIEINQVNVQELLAAADMLQLTEVVD
GCSMYLCRELHPSNALGILRFAEAHNCKELAESALSFINSHFPEVAEQDEILEISSQMFS
RLISSEMIRVDSEYQVFSAAMRWVKHEISNRKRFVFDILANVRLSLVSMRLIEAGIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g4791.t6 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 1 71 0.000
7 g4791.t6 Gene3D G3DSA:1.25.40.420 - 72 177 0.000
3 g4791.t6 PANTHER PTHR24412 KELCH PROTEIN 1 167 0.000
4 g4791.t6 PANTHER PTHR24412:SF401 FI11917P 1 167 0.000
2 g4791.t6 Pfam PF00651 BTB/POZ domain 1 69 0.000
1 g4791.t6 Pfam PF07707 BTB And C-terminal Kelch 76 173 0.000
9 g4791.t6 ProSiteProfiles PS50097 BTB domain profile. 1 40 9.889
6 g4791.t6 SMART SM00875 BACK_2 75 177 0.000
5 g4791.t6 SUPERFAMILY SSF54695 POZ domain 1 68 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed