Gene loci information

Transcript annotation

  • This transcript has been annotated as Actin-binding protein IPP.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4791 g4791.t8 isoform g4791.t8 4989511 4991734
chr_2 g4791 g4791.t8 exon g4791.t8.exon1 4989511 4990785
chr_2 g4791 g4791.t8 TSS g4791.t8 4989523 4989523
chr_2 g4791 g4791.t8 cds g4791.t8.CDS1 4989996 4990785
chr_2 g4791 g4791.t8 exon g4791.t8.exon2 4990849 4990917
chr_2 g4791 g4791.t8 cds g4791.t8.CDS2 4990849 4990917
chr_2 g4791 g4791.t8 exon g4791.t8.exon3 4991429 4991536
chr_2 g4791 g4791.t8 cds g4791.t8.CDS3 4991429 4991536
chr_2 g4791 g4791.t8 exon g4791.t8.exon4 4991630 4991734
chr_2 g4791 g4791.t8 cds g4791.t8.CDS4 4991630 4991733
chr_2 g4791 g4791.t8 TTS g4791.t8 4992655 4992655

Sequences

>g4791.t8 Gene=g4791 Length=1557
GAGGTACAACTTTAGTTTTTGTTGATTGAAGAAAATTTTTGATAAAAAAAAAACAATTTT
TTTTATTTTAATCACTTGCGATTTGATAATTTGTCTAGTATTATTGATAAAACAGTATTT
AAAGTGAACAACTCTAATATGATATAATTAAAACATGACATAAAAACCAAAAAGTGATGA
TAAATGATATTGAGAAAAAGTGGGGAGTTGTCTGTATAGAAAATATTTTCATTGTGCAAA
ATTAAAAATTAAAAGAAATGCCACAAAACGAGTAGAATACAAATACTATTGTTTCAACAC
CAGAATCGCCTCTCATCAGTCTATCAAATAGTTATTACACAAATTTTTTTAAAAATCTCA
AACTCATTTATGATGATGAGCGATTTTTTGATGTTGAATTGCATTGTGAAAGTAATGGAA
AAGAGCAAAATATCATAAAAGCACATAGAATAGTATTATCAGCCTCAAGCCGCTATTTTG
ATGCAATGTTTGGAAATGATTTCAATGAAAATAAGAATAAAATTGTTAAATTTCACTCTA
TAAGTTATTCGATATTGAAAGAATTAATTGGATTCATTTATACTGGAAAAATTGAAATAA
ATCAAGTAAATGTGCAAGAATTATTAGCAGCAGCTGATATGCTTCAATTGACAGAAGTAG
TCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCTTTAGGAATTC
TGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTTTCATTTATTA
ATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCATCACAAATGT
TTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAAGTATTTTCTG
CAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTTTTTGATATTT
TGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGAAATTGCACAAT
GTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAAAAAGATTTAACACTCAGAC
GTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGAGCTAAAAAATCAATTTATG
TGATTGGTGGATCAAAGAGAGAAAGCACATCAGGCTGGACAAATGATTGCATATTTGATA
GTGTAATTAAATACGATATTTTTAGACGAGAATGGGTTGATGTTGCTCCTATGGCTGTTG
GCAGAATTTTACCTGGTGTTACTGTATTAAATTCTAAAATTTTTGTTGTTGGTGGCGAAA
GAGGCTCTCAAATATTTGCAAATGGTGAAGTTTATGATCCAATAACTAATACATGGGAAA
ATTTGCCTGCTATGATGACACCTCGATGTGAATTTGGTTTATGCTCTTTGGGTGGAACAA
TATATGCGATAGGAGGATGGATTGGTGAAGATATAGGAGATAGCATAGAATGTTATGATC
CAATAAGAAAATCCTGGCAAACTGTTGATAAATTACCAGAAGCAAGATTCAGTATGG

>g4791.t8 Gene=g4791 Length=357
MFGNDFNENKNKIVKFHSISYSILKELIGFIYTGKIEINQVNVQELLAAADMLQLTEVVD
GCSMYLCRELHPSNALGILRFAEAHNCKELAESALSFINSHFPEVAEQDEILEISSQMFS
RLISSEMIRVDSEYQVFSAAMRWVKHEISNRKRFVFDILANVRLSLVSMRLIEAEIAQCR
DMSLKIALISLKKDLTLRRGQLVPVSANPRLGAKKSIYVIGGSKRESTSGWTNDCIFDSV
IKYDIFRREWVDVAPMAVGRILPGVTVLNSKIFVVGGERGSQIFANGEVYDPITNTWENL
PAMMTPRCEFGLCSLGGTIYAIGGWIGEDIGDSIECYDPIRKSWQTVDKLPEARFSM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g4791.t8 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 1 71 0.000000
16 g4791.t8 Gene3D G3DSA:1.25.40.420 - 72 185 0.000000
17 g4791.t8 Gene3D G3DSA:2.120.10.80 - 198 357 0.000000
5 g4791.t8 PANTHER PTHR24412 KELCH PROTEIN 15 357 0.000000
6 g4791.t8 PANTHER PTHR24412:SF35 ACTIN-BINDING PROTEIN IPP 15 357 0.000000
9 g4791.t8 PRINTS PR00501 Kelch repeat signature 269 282 0.000025
8 g4791.t8 PRINTS PR00501 Kelch repeat signature 286 300 0.000025
7 g4791.t8 PRINTS PR00501 Kelch repeat signature 301 313 0.000025
4 g4791.t8 Pfam PF00651 BTB/POZ domain 1 69 0.000000
1 g4791.t8 Pfam PF07707 BTB And C-terminal Kelch 76 173 0.000000
2 g4791.t8 Pfam PF01344 Kelch motif 260 304 0.000000
3 g4791.t8 Pfam PF01344 Kelch motif 306 347 0.000000
19 g4791.t8 ProSiteProfiles PS50097 BTB domain profile. 1 40 9.889000
12 g4791.t8 SMART SM00875 BACK_2 75 177 0.000000
13 g4791.t8 SMART SM00612 kelc_smart 216 270 0.007700
15 g4791.t8 SMART SM00612 kelc_smart 271 317 0.000000
14 g4791.t8 SMART SM00612 kelc_smart 318 357 0.059000
11 g4791.t8 SUPERFAMILY SSF54695 POZ domain 1 68 0.000000
10 g4791.t8 SUPERFAMILY SSF117281 Kelch motif 215 356 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003779 actin binding MF
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed