Gene loci information

Transcript annotation

  • This transcript has been annotated as Actin-binding protein IPP.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4791 g4791.t9 isoform g4791.t9 4989511 4992659
chr_2 g4791 g4791.t9 exon g4791.t9.exon1 4989511 4990785
chr_2 g4791 g4791.t9 TSS g4791.t9 4989523 4989523
chr_2 g4791 g4791.t9 cds g4791.t9.CDS1 4989996 4990785
chr_2 g4791 g4791.t9 exon g4791.t9.exon2 4990849 4990917
chr_2 g4791 g4791.t9 cds g4791.t9.CDS2 4990849 4990917
chr_2 g4791 g4791.t9 exon g4791.t9.exon3 4991429 4991536
chr_2 g4791 g4791.t9 cds g4791.t9.CDS3 4991429 4991536
chr_2 g4791 g4791.t9 exon g4791.t9.exon4 4991630 4991739
chr_2 g4791 g4791.t9 cds g4791.t9.CDS4 4991630 4991739
chr_2 g4791 g4791.t9 exon g4791.t9.exon5 4991809 4992138
chr_2 g4791 g4791.t9 cds g4791.t9.CDS5 4991809 4992138
chr_2 g4791 g4791.t9 exon g4791.t9.exon6 4992221 4992659
chr_2 g4791 g4791.t9 cds g4791.t9.CDS6 4992221 4992355
chr_2 g4791 g4791.t9 TTS g4791.t9 4992655 4992655

Sequences

>g4791.t9 Gene=g4791 Length=2331
GAGGTACAACTTTAGTTTTTGTTGATTGAAGAAAATTTTTGATAAAAAAAAAACAATTTT
TTTTATTTTAATCACTTGCGATTTGATAATTTGTCTAGTATTATTGATAAAACAGTATTT
AAAGTGAACAACTCTAATATGATATAATTAAAACATGACATAAAAACCAAAAAGTGATGA
TAAATGATATTGAGAAAAAGTGGGGAGTTGTCTGTATAGAAAATATTTTCATTGTGCAAA
ATTAAAAATTAAAAGAAATGCCACAAAACGAGTAGAATACAAATACTATTGTTTCAACAC
CAGAATCGCCTCTCATCAGTCTATCAAATAGTTATTACACAAATTTTTTTAAAAATCTCA
AACTCATTTATGATGATGAGCGATTTTTTGATGTTGAATTGCATTGTGAAAGTAATGGAA
AAGAGCAAAATATCATAAAAGCACATAGAATAGTATTATCAGCCTCAAGCCGCTATTTTG
ATGCAATGTTTGGAAATGATTTCAATGAAAATAAGAATAAAATTGTTAAATTTCACTCTA
TAAGTTATTCGATATTGAAAGAATTAATTGGATTCATTTATACTGGAAAAATTGAAATAA
ATCAAGTAAATGTGCAAGAATTATTAGCAGCAGCTGATATGCTTCAATTGACAGAAGTAG
TCGATGGCTGTTCAATGTATTTATGTCGTGAATTGCATCCTTCTAATGCTTTAGGAATTC
TGAGATTTGCTGAGGCACATAATTGTAAAGAGCTTGCTGAATCTGCACTTTCATTTATTA
ATTCACATTTTCCTGAAGTCGCAGAACAAGATGAAATATTAGAAATCTCATCACAAATGT
TTTCACGTCTTATATCATCAGAAATGATAAGAGTTGACAGCGAATACCAAGTATTTTCTG
CAGCAATGCGTTGGGTCAAGCATGAAATCAGTAACCGAAAGAGATTTGTTTTTGATATTT
TGGCAAATGTTCGCCTGTCTCTCGTTTCCATGCGATTGATTGAAGCTGAAATTGCACAAT
GTCGTGATATGAGTTTAAAAATTGCTTTAATTTCACTGAAAAAAGATTTAACACTCAGAC
GTGGACAATTAGTCCCTGTTAGTGCAAATCCTAGATTGGGAGCTAAAAAATCAATTTATG
TGATTGGTGGATCAAAGAGAGAAAGCACATCAGGCTGGACAAATGATTGCATATTTGATA
GTGTAATTAAATACGATATTTTTAGACGAGAATGGGTTGATGTTGCTCCTATGGCTGTTG
GCAGAATTTTACCTGGTGTTACTGTATTAAATTCTAAAATTTTTGTTGTTGGTGGCGAAA
GAGGCTCTCAAATATTTGCAAATGGTGAAGTTTATGATCCAATAACTAATACATGGGAAA
ATTTGCCTGCTATGATGACACCTCGATGTGAATTTGGTTTATGCTCTTTGGGTGGAACAA
TATATGCGATAGGAGGATGGATTGGTGAAGATATAGGAGATAGCATAGAATGTTATGATC
CAATAAGAAAATCCTGGCAAACTGTTGATAAATTACCAGAAGCAAGATTCAGTATGGGAT
TGGTTTCATTTGAAGGACTCATATATATTGTTGGTGGTTGCACACAAAGTAGCAGACATC
TTCCAGATCTTATAAGTTACAATCCAGTAACAAAAGAATTTACACATTTATCAAAAATGC
AGACAGCTCGCTGTCAAATGGGAGTAGCTATACTCGGAAGGCATCTTTATGTAGTAGGAG
GCAACTCAAGTCATCAAGAAGTCCTTCAAAGTGTTGAAAAATATTCCTTTGATGATGATA
AATGGACTAGTGTGTCTCCCATGACAACGGCACGTGCCTCACCAGCAGTTTCATCAGCTG
ATGGTGTTCTTTACGTCGCTGGCGGCGATCAGACATGTGAAGTCAACTTTTATCGAGCAC
AAATCACAATAAATTCATTTGAATGTTATAATCCATTGACAGACACGTGGAAGACCTGTC
CATCATTACCGACGAGTAGAAGTGAAGCGGGCAGTGTTGTGATTTAAAAAATTATGCATG
TAACCAATACTCATCATTAAAAATTTTTTTTATTTCATCACACATTAATAAAAAGTATTA
CGATATCATTCAATTAAATTTTAATTGAATTAAAGAAAATTTTAATTAATTATATTCACA
CAGAAATATGTATCTATGTTCCTATACACAAAGCATTTTAAAAGCTTCACTTATTAATTA
ATTATCTTGCATTTTAAGCTAACCAATTAAATTATGCTTAATAAATGACATGTTTTTTGT
AGCATGTTGAAAAGTCCAAATAAAAATATTTATGAAATTTTTCTCAGAAAA

>g4791.t9 Gene=g4791 Length=513
MFGNDFNENKNKIVKFHSISYSILKELIGFIYTGKIEINQVNVQELLAAADMLQLTEVVD
GCSMYLCRELHPSNALGILRFAEAHNCKELAESALSFINSHFPEVAEQDEILEISSQMFS
RLISSEMIRVDSEYQVFSAAMRWVKHEISNRKRFVFDILANVRLSLVSMRLIEAEIAQCR
DMSLKIALISLKKDLTLRRGQLVPVSANPRLGAKKSIYVIGGSKRESTSGWTNDCIFDSV
IKYDIFRREWVDVAPMAVGRILPGVTVLNSKIFVVGGERGSQIFANGEVYDPITNTWENL
PAMMTPRCEFGLCSLGGTIYAIGGWIGEDIGDSIECYDPIRKSWQTVDKLPEARFSMGLV
SFEGLIYIVGGCTQSSRHLPDLISYNPVTKEFTHLSKMQTARCQMGVAILGRHLYVVGGN
SSHQEVLQSVEKYSFDDDKWTSVSPMTTARASPAVSSADGVLYVAGGDQTCEVNFYRAQI
TINSFECYNPLTDTWKTCPSLPTSRSEAGSVVI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g4791.t9 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 1 71 0.0000000
16 g4791.t9 Gene3D G3DSA:1.25.40.420 - 72 185 0.0000000
18 g4791.t9 Gene3D G3DSA:2.120.10.80 - 204 327 0.0000000
17 g4791.t9 Gene3D G3DSA:2.120.10.80 - 328 478 0.0000000
19 g4791.t9 Gene3D G3DSA:2.120.10.80 - 479 513 0.0000021
10 g4791.t9 PANTHER PTHR24412 KELCH PROTEIN 1 370 0.0000000
9 g4791.t9 PANTHER PTHR24412 KELCH PROTEIN 284 392 0.0000000
8 g4791.t9 PANTHER PTHR24412 KELCH PROTEIN 361 512 0.0000000
21 g4791.t9 PIRSF PIRSF037037 Kelch_gigaxonin 1 513 0.0000000
13 g4791.t9 PRINTS PR00501 Kelch repeat signature 269 282 0.0000630
12 g4791.t9 PRINTS PR00501 Kelch repeat signature 286 300 0.0000630
11 g4791.t9 PRINTS PR00501 Kelch repeat signature 301 313 0.0000630
7 g4791.t9 Pfam PF00651 BTB/POZ domain 1 69 0.0000000
1 g4791.t9 Pfam PF07707 BTB And C-terminal Kelch 76 173 0.0000000
2 g4791.t9 Pfam PF01344 Kelch motif 260 304 0.0000000
6 g4791.t9 Pfam PF01344 Kelch motif 306 347 0.0000000
5 g4791.t9 Pfam PF01344 Kelch motif 354 399 0.0000041
3 g4791.t9 Pfam PF01344 Kelch motif 401 446 0.0000000
4 g4791.t9 Pfam PF01344 Kelch motif 449 502 0.0000000
29 g4791.t9 ProSiteProfiles PS50097 BTB domain profile. 1 40 9.8890000
22 g4791.t9 SMART SM00875 BACK_2 75 177 0.0000000
24 g4791.t9 SMART SM00612 kelc_smart 216 270 0.0077000
28 g4791.t9 SMART SM00612 kelc_smart 271 317 0.0000000
26 g4791.t9 SMART SM00612 kelc_smart 318 364 0.0000000
27 g4791.t9 SMART SM00612 kelc_smart 365 412 0.0001100
25 g4791.t9 SMART SM00612 kelc_smart 413 460 0.0000000
23 g4791.t9 SMART SM00612 kelc_smart 461 513 0.0008700
15 g4791.t9 SUPERFAMILY SSF54695 POZ domain 1 68 0.0000000
14 g4791.t9 SUPERFAMILY SSF50965 Galactose oxidase, central domain 289 513 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed